miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25717 3' -58 NC_005337.1 + 84215 0.66 0.864079
Target:  5'- aCGGGcUGCUGuGCGGGCGcggCCUgCGGgCa -3'
miRNA:   3'- gGUCC-AUGGC-CGCCUGCa--GGA-GCUgG- -5'
25717 3' -58 NC_005337.1 + 98956 0.66 0.841246
Target:  5'- cCUGGGUcCgCGGCGc-CGUCUUCGACUc -3'
miRNA:   3'- -GGUCCAuG-GCCGCcuGCAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 89725 0.66 0.833268
Target:  5'- aCCcGGUACCGcuccaGGAUggaGUUCUUGACCu -3'
miRNA:   3'- -GGuCCAUGGCcg---CCUG---CAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 46024 0.66 0.871305
Target:  5'- gCCGGcGcGCCGGCacgcacGACGUCUUCGcagcaGCCc -3'
miRNA:   3'- -GGUC-CaUGGCCGc-----CUGCAGGAGC-----UGG- -5'
25717 3' -58 NC_005337.1 + 26092 0.66 0.856658
Target:  5'- gCGGGgaagcGCCGcCGGAUGUCCaccgCGGCg -3'
miRNA:   3'- gGUCCa----UGGCcGCCUGCAGGa---GCUGg -5'
25717 3' -58 NC_005337.1 + 65873 0.66 0.864079
Target:  5'- aCgGGGUGCUGGCcgcGGuCG-CCgUGACCg -3'
miRNA:   3'- -GgUCCAUGGCCG---CCuGCaGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 68201 0.66 0.861134
Target:  5'- cCCGGGggcGCCGcuGCGGgcccgccugacgGCGUCCggguuccggagcgCGGCCg -3'
miRNA:   3'- -GGUCCa--UGGC--CGCC------------UGCAGGa------------GCUGG- -5'
25717 3' -58 NC_005337.1 + 11929 0.66 0.841246
Target:  5'- gCAGGuUGCCGaCGu-CGUCC-CGGCCg -3'
miRNA:   3'- gGUCC-AUGGCcGCcuGCAGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 130261 0.66 0.833268
Target:  5'- gCCAuGaGCCuGCgGGACGUCCUCGucagcgcgACCg -3'
miRNA:   3'- -GGUcCaUGGcCG-CCUGCAGGAGC--------UGG- -5'
25717 3' -58 NC_005337.1 + 57494 0.66 0.849044
Target:  5'- -gAGGUGCUGGUGGACagcaUCaUCGAgCg -3'
miRNA:   3'- ggUCCAUGGCCGCCUGc---AGgAGCUgG- -5'
25717 3' -58 NC_005337.1 + 125066 0.66 0.871305
Target:  5'- aCGGGUacgACCGGUucuGgGUCCgCGACCg -3'
miRNA:   3'- gGUCCA---UGGCCGcc-UgCAGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 49015 0.66 0.852112
Target:  5'- -gGGGUACCagaccaucaucaucGCGGugGUCgUCG-CCa -3'
miRNA:   3'- ggUCCAUGGc-------------CGCCugCAGgAGCuGG- -5'
25717 3' -58 NC_005337.1 + 97676 0.66 0.833268
Target:  5'- uCCAGGccgcgggcgUGCacguGGUGGACGUCUUCuucucGCCg -3'
miRNA:   3'- -GGUCC---------AUGg---CCGCCUGCAGGAGc----UGG- -5'
25717 3' -58 NC_005337.1 + 121292 0.66 0.849044
Target:  5'- uCCcuGUACgGGUaccUGUCCUCGACCu -3'
miRNA:   3'- -GGucCAUGgCCGccuGCAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 94057 0.66 0.833268
Target:  5'- aCgAGGUuCCGGgaaCGGGCugGUCCcugCGGCCg -3'
miRNA:   3'- -GgUCCAuGGCC---GCCUG--CAGGa--GCUGG- -5'
25717 3' -58 NC_005337.1 + 39754 0.66 0.833268
Target:  5'- cCCGuacGUGCUGuacGCGcGCGUCUUCGACCu -3'
miRNA:   3'- -GGUc--CAUGGC---CGCcUGCAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 91903 0.66 0.833268
Target:  5'- uCCGGGUcGCCGGUcacGACGUgCgUCG-CCg -3'
miRNA:   3'- -GGUCCA-UGGCCGc--CUGCA-GgAGCuGG- -5'
25717 3' -58 NC_005337.1 + 112915 0.66 0.871305
Target:  5'- uUCGGau-CCGGgUGGuGCGUCgUCGACCu -3'
miRNA:   3'- -GGUCcauGGCC-GCC-UGCAGgAGCUGG- -5'
25717 3' -58 NC_005337.1 + 91658 0.66 0.833268
Target:  5'- aCCGcGGUGCCgcacauGGCGGGCGcuagcagCCgCGACg -3'
miRNA:   3'- -GGU-CCAUGG------CCGCCUGCa------GGaGCUGg -5'
25717 3' -58 NC_005337.1 + 38697 0.66 0.856658
Target:  5'- gCCuGGUGUCGGCGGcggcccguCGUCCU-GACg -3'
miRNA:   3'- -GGuCCAUGGCCGCCu-------GCAGGAgCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.