miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25717 3' -58 NC_005337.1 + 12943 1.13 0.001126
Target:  5'- uCCAGGUACCGGCGGACGUCCUCGACCg -3'
miRNA:   3'- -GGUCCAUGGCCGCCUGCAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 47671 0.79 0.23155
Target:  5'- cCCGGcaUGCUGGCGGGCGUCCgCGugCg -3'
miRNA:   3'- -GGUCc-AUGGCCGCCUGCAGGaGCugG- -5'
25717 3' -58 NC_005337.1 + 2880 0.78 0.266334
Target:  5'- aCCAGcGUgGCCGGCGG-CGUCCggcugcaGACCa -3'
miRNA:   3'- -GGUC-CA-UGGCCGCCuGCAGGag-----CUGG- -5'
25717 3' -58 NC_005337.1 + 117551 0.76 0.346075
Target:  5'- gUCGGGUguGCCGucgaggacauccccGUGGACGUCgUCGACCc -3'
miRNA:   3'- -GGUCCA--UGGC--------------CGCCUGCAGgAGCUGG- -5'
25717 3' -58 NC_005337.1 + 131535 0.75 0.363633
Target:  5'- aUAGGcccgugcccgcUACCGGCGGACGUCgUCGcGCUc -3'
miRNA:   3'- gGUCC-----------AUGGCCGCCUGCAGgAGC-UGG- -5'
25717 3' -58 NC_005337.1 + 82615 0.75 0.363633
Target:  5'- uCCAGGggcgaCGGCGGGCG-CUggCGACCg -3'
miRNA:   3'- -GGUCCaug--GCCGCCUGCaGGa-GCUGG- -5'
25717 3' -58 NC_005337.1 + 99089 0.75 0.379394
Target:  5'- gCAGGUGuggaCGGCGGACGacgCCgucgcCGACCa -3'
miRNA:   3'- gGUCCAUg---GCCGCCUGCa--GGa----GCUGG- -5'
25717 3' -58 NC_005337.1 + 125113 0.75 0.395607
Target:  5'- aCCGGGgucuCCGGCauccaGGAgGUCCUccCGGCCg -3'
miRNA:   3'- -GGUCCau--GGCCG-----CCUgCAGGA--GCUGG- -5'
25717 3' -58 NC_005337.1 + 24383 0.74 0.41226
Target:  5'- uCCAcGcGCacguGGCGGACGUgCUCGACCg -3'
miRNA:   3'- -GGUcCaUGg---CCGCCUGCAgGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 69468 0.74 0.420747
Target:  5'- gCAGGUACCGGgaGGcgACGUCCccgUCGGCg -3'
miRNA:   3'- gGUCCAUGGCCg-CC--UGCAGG---AGCUGg -5'
25717 3' -58 NC_005337.1 + 40812 0.74 0.420747
Target:  5'- aCCAcGUucccGCCGGCGGGCGUCUUCcGCa -3'
miRNA:   3'- -GGUcCA----UGGCCGCCUGCAGGAGcUGg -5'
25717 3' -58 NC_005337.1 + 118510 0.73 0.446829
Target:  5'- gCGGGUGaccggcgucgugUCGGCGGAUG-CCaUCGGCCa -3'
miRNA:   3'- gGUCCAU------------GGCCGCCUGCaGG-AGCUGG- -5'
25717 3' -58 NC_005337.1 + 67556 0.73 0.446829
Target:  5'- uCCGGGUugaGGCGGaagGCGUCgUUGGCCa -3'
miRNA:   3'- -GGUCCAuggCCGCC---UGCAGgAGCUGG- -5'
25717 3' -58 NC_005337.1 + 108494 0.73 0.450374
Target:  5'- uCCAGGUGCCucuccaaucuguccaGGCGGGCGccagucUCC-CGACa -3'
miRNA:   3'- -GGUCCAUGG---------------CCGCCUGC------AGGaGCUGg -5'
25717 3' -58 NC_005337.1 + 18857 0.73 0.455721
Target:  5'- cCCGGacgGCCGGCGagacGGCGUCCUCGGa- -3'
miRNA:   3'- -GGUCca-UGGCCGC----CUGCAGGAGCUgg -5'
25717 3' -58 NC_005337.1 + 127795 0.73 0.455721
Target:  5'- gCGGGUGCUGGUGGACG-CCggcgcUGACg -3'
miRNA:   3'- gGUCCAUGGCCGCCUGCaGGa----GCUGg -5'
25717 3' -58 NC_005337.1 + 66092 0.73 0.464708
Target:  5'- cCCGGG-GCCGcGCucaGGGCGUaCUCGGCCa -3'
miRNA:   3'- -GGUCCaUGGC-CG---CCUGCAgGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 59572 0.73 0.473786
Target:  5'- aUCuGGU-CgCGGCGGAUGccggucuccUCCUCGACCu -3'
miRNA:   3'- -GGuCCAuG-GCCGCCUGC---------AGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 71006 0.73 0.473786
Target:  5'- aCCGGGcagACCGuGCucacGGACGUgCUCGACa -3'
miRNA:   3'- -GGUCCa--UGGC-CG----CCUGCAgGAGCUGg -5'
25717 3' -58 NC_005337.1 + 49816 0.73 0.482952
Target:  5'- -gAGGUGCCGGCcgcgcccuccgcGGGC-UCCUCGuCCu -3'
miRNA:   3'- ggUCCAUGGCCG------------CCUGcAGGAGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.