miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25717 3' -58 NC_005337.1 + 26092 0.66 0.856658
Target:  5'- gCGGGgaagcGCCGcCGGAUGUCCaccgCGGCg -3'
miRNA:   3'- gGUCCa----UGGCcGCCUGCAGGa---GCUGg -5'
25717 3' -58 NC_005337.1 + 49015 0.66 0.852112
Target:  5'- -gGGGUACCagaccaucaucaucGCGGugGUCgUCG-CCa -3'
miRNA:   3'- ggUCCAUGGc-------------CGCCugCAGgAGCuGG- -5'
25717 3' -58 NC_005337.1 + 113857 0.66 0.849044
Target:  5'- uCCaAGaGUGCCGcacCGGugGUCa-CGACCa -3'
miRNA:   3'- -GG-UC-CAUGGCc--GCCugCAGgaGCUGG- -5'
25717 3' -58 NC_005337.1 + 132120 0.66 0.849044
Target:  5'- gCUGGGUGCCGacgugaacGCccgGGGCGUCgUUGACa -3'
miRNA:   3'- -GGUCCAUGGC--------CG---CCUGCAGgAGCUGg -5'
25717 3' -58 NC_005337.1 + 121292 0.66 0.849044
Target:  5'- uCCcuGUACgGGUaccUGUCCUCGACCu -3'
miRNA:   3'- -GGucCAUGgCCGccuGCAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 57494 0.66 0.849044
Target:  5'- -gAGGUGCUGGUGGACagcaUCaUCGAgCg -3'
miRNA:   3'- ggUCCAUGGCCGCCUGc---AGgAGCUgG- -5'
25717 3' -58 NC_005337.1 + 34541 0.66 0.849044
Target:  5'- cUCGcGUaGCCGGCGGgagaGCGUCCUguccgcgacgaUGGCCg -3'
miRNA:   3'- -GGUcCA-UGGCCGCC----UGCAGGA-----------GCUGG- -5'
25717 3' -58 NC_005337.1 + 126769 0.66 0.846724
Target:  5'- uUCAGGUaccuggagACCGGCagccccguggaccuGGACGUcgugcgcgcCCUCGucGCCa -3'
miRNA:   3'- -GGUCCA--------UGGCCG--------------CCUGCA---------GGAGC--UGG- -5'
25717 3' -58 NC_005337.1 + 97915 0.66 0.844387
Target:  5'- gCCAGGggccGCCGcccGUGGGCGUgauggcgguguguccCUUCGAUCa -3'
miRNA:   3'- -GGUCCa---UGGC---CGCCUGCA---------------GGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 69303 0.66 0.841246
Target:  5'- gCAGGaGCCGGUGGACcuucuucuuGUUCUUGcACa -3'
miRNA:   3'- gGUCCaUGGCCGCCUG---------CAGGAGC-UGg -5'
25717 3' -58 NC_005337.1 + 10568 0.66 0.841246
Target:  5'- uCCGGaGUGgaGGCGGAUcUCCgCGACg -3'
miRNA:   3'- -GGUC-CAUggCCGCCUGcAGGaGCUGg -5'
25717 3' -58 NC_005337.1 + 11929 0.66 0.841246
Target:  5'- gCAGGuUGCCGaCGu-CGUCC-CGGCCg -3'
miRNA:   3'- gGUCC-AUGGCcGCcuGCAGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 98956 0.66 0.841246
Target:  5'- cCUGGGUcCgCGGCGc-CGUCUUCGACUc -3'
miRNA:   3'- -GGUCCAuG-GCCGCcuGCAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 89676 0.66 0.841246
Target:  5'- cCCAGGcGCCGGaacACGcCCUUGGCg -3'
miRNA:   3'- -GGUCCaUGGCCgccUGCaGGAGCUGg -5'
25717 3' -58 NC_005337.1 + 91658 0.66 0.833268
Target:  5'- aCCGcGGUGCCgcacauGGCGGGCGcuagcagCCgCGACg -3'
miRNA:   3'- -GGU-CCAUGG------CCGCCUGCa------GGaGCUGg -5'
25717 3' -58 NC_005337.1 + 91903 0.66 0.833268
Target:  5'- uCCGGGUcGCCGGUcacGACGUgCgUCG-CCg -3'
miRNA:   3'- -GGUCCA-UGGCCGc--CUGCA-GgAGCuGG- -5'
25717 3' -58 NC_005337.1 + 89725 0.66 0.833268
Target:  5'- aCCcGGUACCGcuccaGGAUggaGUUCUUGACCu -3'
miRNA:   3'- -GGuCCAUGGCcg---CCUG---CAGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 94057 0.66 0.833268
Target:  5'- aCgAGGUuCCGGgaaCGGGCugGUCCcugCGGCCg -3'
miRNA:   3'- -GgUCCAuGGCC---GCCUG--CAGGa--GCUGG- -5'
25717 3' -58 NC_005337.1 + 97676 0.66 0.833268
Target:  5'- uCCAGGccgcgggcgUGCacguGGUGGACGUCUUCuucucGCCg -3'
miRNA:   3'- -GGUCC---------AUGg---CCGCCUGCAGGAGc----UGG- -5'
25717 3' -58 NC_005337.1 + 130261 0.66 0.833268
Target:  5'- gCCAuGaGCCuGCgGGACGUCCUCGucagcgcgACCg -3'
miRNA:   3'- -GGUcCaUGGcCG-CCUGCAGGAGC--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.