miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25717 3' -58 NC_005337.1 + 1583 0.68 0.758322
Target:  5'- cCCAGGUugUGcGCgacgauguuguccagGGGCGugaucccguUCCUCGAUCg -3'
miRNA:   3'- -GGUCCAugGC-CG---------------CCUGC---------AGGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 2404 0.68 0.735797
Target:  5'- uCCAGGaGgCaGCGGACGaCCUCGgggucgggGCCg -3'
miRNA:   3'- -GGUCCaUgGcCGCCUGCaGGAGC--------UGG- -5'
25717 3' -58 NC_005337.1 + 2880 0.78 0.266334
Target:  5'- aCCAGcGUgGCCGGCGG-CGUCCggcugcaGACCa -3'
miRNA:   3'- -GGUC-CA-UGGCCGCCuGCAGGag-----CUGG- -5'
25717 3' -58 NC_005337.1 + 3501 0.69 0.706966
Target:  5'- gCAGGagguugUugUGGCGGGCGUCCacggugcacacgUCgGACCc -3'
miRNA:   3'- gGUCC------AugGCCGCCUGCAGG------------AG-CUGG- -5'
25717 3' -58 NC_005337.1 + 5515 0.69 0.697225
Target:  5'- aCCAGGUucgcgcGCCGGCGGAgcucUGUCacgCGcuCCa -3'
miRNA:   3'- -GGUCCA------UGGCCGCCU----GCAGga-GCu-GG- -5'
25717 3' -58 NC_005337.1 + 5745 0.69 0.687433
Target:  5'- cUCGGGcucugGCacggCGGCGGGCGgcagCCgcgCGACCa -3'
miRNA:   3'- -GGUCCa----UG----GCCGCCUGCa---GGa--GCUGG- -5'
25717 3' -58 NC_005337.1 + 5824 0.66 0.856658
Target:  5'- gCC-GGU-CCGGCGGugugaaguGCGgCCgCGACCu -3'
miRNA:   3'- -GGuCCAuGGCCGCC--------UGCaGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 6032 0.68 0.735797
Target:  5'- cCCAGaGUugucGCgGGCguGGAUGUCCgcgcccgCGGCCa -3'
miRNA:   3'- -GGUC-CA----UGgCCG--CCUGCAGGa------GCUGG- -5'
25717 3' -58 NC_005337.1 + 6984 0.71 0.605228
Target:  5'- gCGGGUgacGCCGugcuuguccauggcGCGGACGUCCgCGcCCg -3'
miRNA:   3'- gGUCCA---UGGC--------------CGCCUGCAGGaGCuGG- -5'
25717 3' -58 NC_005337.1 + 7516 0.7 0.667728
Target:  5'- uCCAGGUACCuGaaGAgcagGUCCUCGugCg -3'
miRNA:   3'- -GGUCCAUGGcCgcCUg---CAGGAGCugG- -5'
25717 3' -58 NC_005337.1 + 9126 0.69 0.716647
Target:  5'- uCCAGGUACCGGUacaGCG-CgCUCG-CCg -3'
miRNA:   3'- -GGUCCAUGGCCGcc-UGCaG-GAGCuGG- -5'
25717 3' -58 NC_005337.1 + 10568 0.66 0.841246
Target:  5'- uCCGGaGUGgaGGCGGAUcUCCgCGACg -3'
miRNA:   3'- -GGUC-CAUggCCGCCUGcAGGaGCUGg -5'
25717 3' -58 NC_005337.1 + 10704 0.68 0.745249
Target:  5'- gCCAGGaGCUcgGGCu--CGUCCUcCGACCg -3'
miRNA:   3'- -GGUCCaUGG--CCGccuGCAGGA-GCUGG- -5'
25717 3' -58 NC_005337.1 + 10736 0.69 0.687433
Target:  5'- gUCAGGg--CGGUgGGACGUgcaCUCGACCu -3'
miRNA:   3'- -GGUCCaugGCCG-CCUGCAg--GAGCUGG- -5'
25717 3' -58 NC_005337.1 + 10905 0.69 0.716647
Target:  5'- aCgGGGUACaggGGCGGGggcagGUCCUCGaaguGCCg -3'
miRNA:   3'- -GgUCCAUGg--CCGCCUg----CAGGAGC----UGG- -5'
25717 3' -58 NC_005337.1 + 11232 0.66 0.856658
Target:  5'- gCAGGUGCaccuCGGUGcgcagcccuucGACGUCCgcggggaugugUCGGCCc -3'
miRNA:   3'- gGUCCAUG----GCCGC-----------CUGCAGG-----------AGCUGG- -5'
25717 3' -58 NC_005337.1 + 11602 0.67 0.80833
Target:  5'- gCAGGggcacacCCGGCGGGCcaccUgCUCGACg -3'
miRNA:   3'- gGUCCau-----GGCCGCCUGc---AgGAGCUGg -5'
25717 3' -58 NC_005337.1 + 11811 0.68 0.770279
Target:  5'- gCCAGGUGCCGGUuGGucgaguacacccccAgGUUCUUGAUg -3'
miRNA:   3'- -GGUCCAUGGCCG-CC--------------UgCAGGAGCUGg -5'
25717 3' -58 NC_005337.1 + 11929 0.66 0.841246
Target:  5'- gCAGGuUGCCGaCGu-CGUCC-CGGCCg -3'
miRNA:   3'- gGUCC-AUGGCcGCcuGCAGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 12735 0.72 0.539586
Target:  5'- -gAGGUGCCGGaGGAUGUCCgucuccaCGuCCg -3'
miRNA:   3'- ggUCCAUGGCCgCCUGCAGGa------GCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.