miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25717 5' -55.3 NC_005337.1 + 83938 0.66 0.926374
Target:  5'- -cGGcCGGGcGGCGGGUACCgG-GCGGu -3'
miRNA:   3'- cuCCaGCUC-CUGUCCAUGGgCaUGUC- -5'
25717 5' -55.3 NC_005337.1 + 103359 0.66 0.925834
Target:  5'- -uGGUCGAGaACGGcGUGCUCGUgauggacGCGGa -3'
miRNA:   3'- cuCCAGCUCcUGUC-CAUGGGCA-------UGUC- -5'
25717 5' -55.3 NC_005337.1 + 13922 0.66 0.92086
Target:  5'- cGGGUCGuGGGCGGGcgcaGCCCcgucGUGCu- -3'
miRNA:   3'- cUCCAGCuCCUGUCCa---UGGG----CAUGuc -5'
25717 5' -55.3 NC_005337.1 + 11801 0.66 0.92086
Target:  5'- cAGGUcCGuGGcCAGGUGCCgGUugGu -3'
miRNA:   3'- cUCCA-GCuCCuGUCCAUGGgCAugUc -5'
25717 5' -55.3 NC_005337.1 + 70138 0.66 0.915103
Target:  5'- --cGUCaGGGACAGGUGCuuGUuuCGGa -3'
miRNA:   3'- cucCAGcUCCUGUCCAUGggCAu-GUC- -5'
25717 5' -55.3 NC_005337.1 + 6735 0.66 0.909104
Target:  5'- cGGGG-CGccGGCAGGUACC-GUACAu -3'
miRNA:   3'- -CUCCaGCucCUGUCCAUGGgCAUGUc -5'
25717 5' -55.3 NC_005337.1 + 10914 0.66 0.909104
Target:  5'- aGGGG-CGGGGGCAGGUccucgaaguGCCgCGUgGCGa -3'
miRNA:   3'- -CUCCaGCUCCUGUCCA---------UGG-GCA-UGUc -5'
25717 5' -55.3 NC_005337.1 + 56924 0.66 0.909104
Target:  5'- cGGGGcuacuUCGGGGACAGcGUGgccuCCCG-GCGGg -3'
miRNA:   3'- -CUCC-----AGCUCCUGUC-CAU----GGGCaUGUC- -5'
25717 5' -55.3 NC_005337.1 + 21563 0.66 0.909104
Target:  5'- cGGGGccgcaGAGGAUcgucuugccGGUGCCUGUGCGGu -3'
miRNA:   3'- -CUCCag---CUCCUGu--------CCAUGGGCAUGUC- -5'
25717 5' -55.3 NC_005337.1 + 90810 0.66 0.902864
Target:  5'- uGGGUCGAGGccGCGGGaacuCCCGgggGgAGa -3'
miRNA:   3'- cUCCAGCUCC--UGUCCau--GGGCa--UgUC- -5'
25717 5' -55.3 NC_005337.1 + 92589 0.67 0.889676
Target:  5'- -uGGUgGAGa--GGGaGCCCGUGCAGa -3'
miRNA:   3'- cuCCAgCUCcugUCCaUGGGCAUGUC- -5'
25717 5' -55.3 NC_005337.1 + 80508 0.67 0.889676
Target:  5'- -cGGcCGGGGGCGGGcacgccgagGCCCGgggcGCGGa -3'
miRNA:   3'- cuCCaGCUCCUGUCCa--------UGGGCa---UGUC- -5'
25717 5' -55.3 NC_005337.1 + 83239 0.67 0.889676
Target:  5'- cGGGGUUGGGGAUGcGGcGCCCGcGCu- -3'
miRNA:   3'- -CUCCAGCUCCUGU-CCaUGGGCaUGuc -5'
25717 5' -55.3 NC_005337.1 + 105610 0.67 0.882733
Target:  5'- cGAGGUCGGGGcCGGcGUGCCguucugcacCGU-CGGg -3'
miRNA:   3'- -CUCCAGCUCCuGUC-CAUGG---------GCAuGUC- -5'
25717 5' -55.3 NC_005337.1 + 124657 0.67 0.875564
Target:  5'- cGAGGUCGAgcgcagccccgaGGuCAGGaucCCCGUGCu- -3'
miRNA:   3'- -CUCCAGCU------------CCuGUCCau-GGGCAUGuc -5'
25717 5' -55.3 NC_005337.1 + 32818 0.67 0.875564
Target:  5'- uGAGuGUCGAGGuACGGG-ACCaugGCGGg -3'
miRNA:   3'- -CUC-CAGCUCC-UGUCCaUGGgcaUGUC- -5'
25717 5' -55.3 NC_005337.1 + 68123 0.67 0.868174
Target:  5'- cGGGGUCGcGGGGCcGGUGgCCGcGCGc -3'
miRNA:   3'- -CUCCAGC-UCCUGuCCAUgGGCaUGUc -5'
25717 5' -55.3 NC_005337.1 + 61977 0.67 0.868174
Target:  5'- aGAGGUgcCGGcuGGACAGGaacacgUACuuGUACAGc -3'
miRNA:   3'- -CUCCA--GCU--CCUGUCC------AUGggCAUGUC- -5'
25717 5' -55.3 NC_005337.1 + 119564 0.67 0.860568
Target:  5'- uGGGcGUCGuGGagaGCAGGUACCCGcACc- -3'
miRNA:   3'- -CUC-CAGCuCC---UGUCCAUGGGCaUGuc -5'
25717 5' -55.3 NC_005337.1 + 7956 0.67 0.852751
Target:  5'- aGGGaGUCGGGGugAGGgguUCCGUugGc -3'
miRNA:   3'- -CUC-CAGCUCCugUCCau-GGGCAugUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.