miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 33693 0.66 0.601609
Target:  5'- gGCGGGCGCCaccuccucgaAgGugGUGg-CGCCGa -3'
miRNA:   3'- -UGCCCGCGGcg--------UgCugCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 97169 0.66 0.601609
Target:  5'- gGCGccucGGCGCUGCugcgcucCGGCGaGCUCGaCCGc -3'
miRNA:   3'- -UGC----CCGCGGCGu------GCUGCaCGAGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 60196 0.66 0.601609
Target:  5'- uGCGGGUGCgGCGCGGgGggggacgGCUugggCGCgGg -3'
miRNA:   3'- -UGCCCGCGgCGUGCUgCa------CGA----GCGgC- -5'
25720 3' -63.1 NC_005337.1 + 29674 0.66 0.601609
Target:  5'- nGCGguGGCGCCGUA-----UGCUCGCCGc -3'
miRNA:   3'- -UGC--CCGCGGCGUgcugcACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 115553 0.66 0.601609
Target:  5'- -aGaGGCGCCaGCGCGcCGcagcucCUCGCCGg -3'
miRNA:   3'- ugC-CCGCGG-CGUGCuGCac----GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 77129 0.66 0.601609
Target:  5'- cCGGGUGCUGCgcuccACGGCGUccagGCUgGCgGc -3'
miRNA:   3'- uGCCCGCGGCG-----UGCUGCA----CGAgCGgC- -5'
25720 3' -63.1 NC_005337.1 + 94741 0.66 0.601609
Target:  5'- -gGGGCGCCGgcagcCACGACcgcgaGCUgGCCc -3'
miRNA:   3'- ugCCCGCGGC-----GUGCUGca---CGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 23322 0.66 0.601609
Target:  5'- uAUGGGCGacaCGCA-GACGcGgUCGCCc -3'
miRNA:   3'- -UGCCCGCg--GCGUgCUGCaCgAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 28937 0.66 0.601609
Target:  5'- gACGGGgccuccCGCCGC-CGcACGUGCUgGgCa -3'
miRNA:   3'- -UGCCC------GCGGCGuGC-UGCACGAgCgGc -5'
25720 3' -63.1 NC_005337.1 + 33538 0.66 0.601609
Target:  5'- cACGcGuCGUCGC-CGACGUGCaCGUCGa -3'
miRNA:   3'- -UGCcC-GCGGCGuGCUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39452 0.66 0.595765
Target:  5'- cACGGuaagauccccucaGUgGCG-GACGUGCUCGCCGa -3'
miRNA:   3'- -UGCCcg-----------CGgCGUgCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39223 0.66 0.591873
Target:  5'- cCGGGCGUgcgcgacaaCGCGCaGGCGUuccuGCcCGCCGu -3'
miRNA:   3'- uGCCCGCG---------GCGUG-CUGCA----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 1644 0.66 0.591873
Target:  5'- uGCGcGCGcCCGCgGCGACGaGCUUgGCCGc -3'
miRNA:   3'- -UGCcCGC-GGCG-UGCUGCaCGAG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 38651 0.66 0.591873
Target:  5'- aGCGGGC-CCGCGCccACGgacGC-CGCCa -3'
miRNA:   3'- -UGCCCGcGGCGUGc-UGCa--CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 98527 0.66 0.591873
Target:  5'- cCGGGgGgagcCCGCccgACGgccGCGUGCUUGCCa -3'
miRNA:   3'- uGCCCgC----GGCG---UGC---UGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 63924 0.66 0.591873
Target:  5'- gUGcGGCGgCGCAcCGcCGUGCggaaCGCCGu -3'
miRNA:   3'- uGC-CCGCgGCGU-GCuGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100221 0.66 0.591873
Target:  5'- gGCcGGCGCCGCguGCG-CGUGaUCGCgGu -3'
miRNA:   3'- -UGcCCGCGGCG--UGCuGCACgAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 76327 0.66 0.591873
Target:  5'- cACGGGCgugGCCGUGaggcaGAgGaGCUUGCCGu -3'
miRNA:   3'- -UGCCCG---CGGCGUg----CUgCaCGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 27921 0.66 0.582165
Target:  5'- -gGGGCGCgCGauCugGACGgucauuucaucgUGCUgCGCCGg -3'
miRNA:   3'- ugCCCGCG-GC--GugCUGC------------ACGA-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 52366 0.66 0.582165
Target:  5'- gACGGG-GCCGCugACGGC-UGCgggGCCGu -3'
miRNA:   3'- -UGCCCgCGGCG--UGCUGcACGag-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.