miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 128020 0.66 0.572488
Target:  5'- cGCcGGCGCCaGCgucaGCGACGcUGaCUCGCgCGg -3'
miRNA:   3'- -UGcCCGCGG-CG----UGCUGC-AC-GAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 40038 0.66 0.553257
Target:  5'- aGCGGGCGUCGuCGCG--GUGC--GCCGa -3'
miRNA:   3'- -UGCCCGCGGC-GUGCugCACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 6908 0.66 0.581195
Target:  5'- cGCGGGU-CCGCGcCGGCGcGCagcaucaUCGCCa -3'
miRNA:   3'- -UGCCCGcGGCGU-GCUGCaCG-------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 45030 0.66 0.562851
Target:  5'- aGCGuGGacuGCCGCACGAUGcuccgcaagcUGggCGCCGg -3'
miRNA:   3'- -UGC-CCg--CGGCGUGCUGC----------ACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 96100 0.66 0.553257
Target:  5'- cGCGGGCGCgGCGgagGACaUGCg-GCCGc -3'
miRNA:   3'- -UGCCCGCGgCGUg--CUGcACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 1090 0.66 0.572488
Target:  5'- aGCGGGCuacaGCCgGCGCaGCGccGC-CGCCGg -3'
miRNA:   3'- -UGCCCG----CGG-CGUGcUGCa-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 48919 0.66 0.573454
Target:  5'- cACGGGCaCCGCguccggcaacugcgGCgugaaggcggugaugGACGUGCUgGCCa -3'
miRNA:   3'- -UGCCCGcGGCG--------------UG---------------CUGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 68420 0.66 0.562851
Target:  5'- aGCGcGCGCCGCcgACGACGaguccGCUCucggaGCCGc -3'
miRNA:   3'- -UGCcCGCGGCG--UGCUGCa----CGAG-----CGGC- -5'
25720 3' -63.1 NC_005337.1 + 109391 0.66 0.552301
Target:  5'- cGCGGGUcuggcguGCCGUccacagacACGGCGUGCgCGaCCa -3'
miRNA:   3'- -UGCCCG-------CGGCG--------UGCUGCACGaGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 91465 0.66 0.562851
Target:  5'- cUGGGCGa-GCACGAuccCGUGCuUCGCgGc -3'
miRNA:   3'- uGCCCGCggCGUGCU---GCACG-AGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 10416 0.66 0.552301
Target:  5'- uGCGGcuGCGCCcaggaggacgccuGCGCGGCGgUGCgcgCGUCGu -3'
miRNA:   3'- -UGCC--CGCGG-------------CGUGCUGC-ACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38358 0.66 0.553257
Target:  5'- cGCGaGGCG-CGCGCGGCc-GCcgUCGCCGc -3'
miRNA:   3'- -UGC-CCGCgGCGUGCUGcaCG--AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 43904 0.66 0.562851
Target:  5'- cGCGcGGCcggaagagGCCGCGCGuaACGgccGCUgGCCGc -3'
miRNA:   3'- -UGC-CCG--------CGGCGUGC--UGCa--CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 27921 0.66 0.582165
Target:  5'- -gGGGCGCgCGauCugGACGgucauuucaucgUGCUgCGCCGg -3'
miRNA:   3'- ugCCCGCG-GC--GugCUGC------------ACGA-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 989 0.66 0.582165
Target:  5'- gGCGcGGCGCgCGgAgGGCGgGCgUCGCCu -3'
miRNA:   3'- -UGC-CCGCG-GCgUgCUGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 68323 0.66 0.553257
Target:  5'- -aGGaGgGCgGCACGcGCGUGCccgUGCCGg -3'
miRNA:   3'- ugCC-CgCGgCGUGC-UGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 49447 0.66 0.581195
Target:  5'- cGCGGcCGCgUGCGCGAUGcuggcguUGCUgGCCGc -3'
miRNA:   3'- -UGCCcGCG-GCGUGCUGC-------ACGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36780 0.66 0.581195
Target:  5'- cGCGGaccucguGCGacCCGCugGGCGUcagccGCgUCGCCGg -3'
miRNA:   3'- -UGCC-------CGC--GGCGugCUGCA-----CG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 33693 0.66 0.601609
Target:  5'- gGCGGGCGCCaccuccucgaAgGugGUGg-CGCCGa -3'
miRNA:   3'- -UGCCCGCGGcg--------UgCugCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 43692 0.66 0.559968
Target:  5'- gGCGGaCGCCG-ACGACGgaccgGCcgacgacggcgacuUCGCCGa -3'
miRNA:   3'- -UGCCcGCGGCgUGCUGCa----CG--------------AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.