miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 34982 0.66 0.582165
Target:  5'- uGCGGaacgccGCGCCGCgccaggcagACGGcCGUGCcgaaccccgcgUCGCCGu -3'
miRNA:   3'- -UGCC------CGCGGCG---------UGCU-GCACG-----------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 1090 0.66 0.572488
Target:  5'- aGCGGGCuacaGCCgGCGCaGCGccGC-CGCCGg -3'
miRNA:   3'- -UGCCCG----CGG-CGUGcUGCa-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 118927 0.66 0.553257
Target:  5'- cUGGaaGCGUCGCGCGggcgcaGCGUGCgUCGCgCGa -3'
miRNA:   3'- uGCC--CGCGGCGUGC------UGCACG-AGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 65796 0.66 0.553257
Target:  5'- aGCGcGGCGCCcgGUGCGGCG-GCgucgaaggUGCCGu -3'
miRNA:   3'- -UGC-CCGCGG--CGUGCUGCaCGa-------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 13888 0.66 0.562851
Target:  5'- aACGaccacGUGCCGCACGAgcCGgcagGCgCGCCGg -3'
miRNA:   3'- -UGCc----CGCGGCGUGCU--GCa---CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 77129 0.66 0.601609
Target:  5'- cCGGGUGCUGCgcuccACGGCGUccagGCUgGCgGc -3'
miRNA:   3'- uGCCCGCGGCG-----UGCUGCA----CGAgCGgC- -5'
25720 3' -63.1 NC_005337.1 + 132284 0.66 0.553257
Target:  5'- uGCGGuCGuCCGaCGCGACGcuggaGCUCGuCCGg -3'
miRNA:   3'- -UGCCcGC-GGC-GUGCUGCa----CGAGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 96100 0.66 0.553257
Target:  5'- cGCGGGCGCgGCGgagGACaUGCg-GCCGc -3'
miRNA:   3'- -UGCCCGCGgCGUg--CUGcACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38358 0.66 0.553257
Target:  5'- cGCGaGGCG-CGCGCGGCc-GCcgUCGCCGc -3'
miRNA:   3'- -UGC-CCGCgGCGUGCUGcaCG--AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 68323 0.66 0.553257
Target:  5'- -aGGaGgGCgGCACGcGCGUGCccgUGCCGg -3'
miRNA:   3'- ugCC-CgCGgCGUGC-UGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 109391 0.66 0.552301
Target:  5'- cGCGGGUcuggcguGCCGUccacagacACGGCGUGCgCGaCCa -3'
miRNA:   3'- -UGCCCG-------CGGCG--------UGCUGCACGaGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 80170 0.66 0.553257
Target:  5'- uACGGGCcguGCCgGCGCgcgGACGcGCUCcuGCCGc -3'
miRNA:   3'- -UGCCCG---CGG-CGUG---CUGCaCGAG--CGGC- -5'
25720 3' -63.1 NC_005337.1 + 52366 0.66 0.582165
Target:  5'- gACGGG-GCCGCugACGGC-UGCgggGCCGu -3'
miRNA:   3'- -UGCCCgCGGCG--UGCUGcACGag-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 95305 0.66 0.582165
Target:  5'- -aGGcGCGCgGCGCGcUGUugcGCUCGUCGu -3'
miRNA:   3'- ugCC-CGCGgCGUGCuGCA---CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 111561 0.66 0.553257
Target:  5'- gGC-GGUGCCGUagACGAgGUGCgacaugaacgCGCCGu -3'
miRNA:   3'- -UGcCCGCGGCG--UGCUgCACGa---------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39428 0.66 0.562851
Target:  5'- cGCGGGCGcCCGCuCGGgcCGcGCUCGgUGc -3'
miRNA:   3'- -UGCCCGC-GGCGuGCU--GCaCGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 63212 0.66 0.572488
Target:  5'- gACGGcGCGgCGCAgGuGCaUGUUCGCCa -3'
miRNA:   3'- -UGCC-CGCgGCGUgC-UGcACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 112395 0.66 0.572488
Target:  5'- -aGGaGCGCCGCGCaGGcCGUGCgguagGCCu -3'
miRNA:   3'- ugCC-CGCGGCGUG-CU-GCACGag---CGGc -5'
25720 3' -63.1 NC_005337.1 + 72858 0.66 0.562851
Target:  5'- uGCGGcuguccGCGaacCUGCugGACGUGCaCGCCu -3'
miRNA:   3'- -UGCC------CGC---GGCGugCUGCACGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 23322 0.66 0.601609
Target:  5'- uAUGGGCGacaCGCA-GACGcGgUCGCCc -3'
miRNA:   3'- -UGCCCGCg--GCGUgCUGCaCgAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.