miRNA display CGI


Results 61 - 80 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 100221 0.66 0.591873
Target:  5'- gGCcGGCGCCGCguGCG-CGUGaUCGCgGu -3'
miRNA:   3'- -UGcCCGCGGCG--UGCuGCACgAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 39452 0.66 0.595765
Target:  5'- cACGGuaagauccccucaGUgGCG-GACGUGCUCGCCGa -3'
miRNA:   3'- -UGCCcg-----------CGgCGUgCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 27921 0.66 0.582165
Target:  5'- -gGGGCGCgCGauCugGACGgucauuucaucgUGCUgCGCCGg -3'
miRNA:   3'- ugCCCGCG-GC--GugCUGC------------ACGA-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 23757 0.67 0.543713
Target:  5'- gUGGGCGCCGUguucACcACGcGCgagCGCCa -3'
miRNA:   3'- uGCCCGCGGCG----UGcUGCaCGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 100403 0.67 0.496903
Target:  5'- cGCGGGCGCgCGCuACGAgauCGacGCgCGCCa -3'
miRNA:   3'- -UGCCCGCG-GCG-UGCU---GCa-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 121690 0.67 0.534223
Target:  5'- cGCGGGCGCCaacgugaacgcGCGCGGgGagGCggacaagaCGCCGc -3'
miRNA:   3'- -UGCCCGCGG-----------CGUGCUgCa-CGa-------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 72407 0.67 0.515427
Target:  5'- -gGGGUGgCGCgACGuCGUGCacuacgagUCGCCGc -3'
miRNA:   3'- ugCCCGCgGCG-UGCuGCACG--------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127269 0.67 0.506128
Target:  5'- gGCGGGCgcggacguccgcGCCauggacaaGCACGGCGUcaccccGCUgGCCGu -3'
miRNA:   3'- -UGCCCG------------CGG--------CGUGCUGCA------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 86208 0.67 0.523853
Target:  5'- cCGGGCucuGCacggagaGCACGGCGUcuauccgcgcgucGUUCGCCGc -3'
miRNA:   3'- uGCCCG---CGg------CGUGCUGCA-------------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 101944 0.67 0.524793
Target:  5'- gACGagcuGCGcCCGCACGugGccugccGCUCGCUGu -3'
miRNA:   3'- -UGCc---CGC-GGCGUGCugCa-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 5763 0.67 0.524793
Target:  5'- gGCGGGCggcaGCCGCGCGAccaCGUacGCgacgcaCGCCc -3'
miRNA:   3'- -UGCCCG----CGGCGUGCU---GCA--CGa-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 127044 0.67 0.533277
Target:  5'- gGCGGGCGCggaggugCGCACcgaaGGCGgGUUCGUCu -3'
miRNA:   3'- -UGCCCGCG-------GCGUG----CUGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 108651 0.67 0.533277
Target:  5'- gGCGGGCGaCCGCGCGGacgaaacCGUGUccuucCGCa- -3'
miRNA:   3'- -UGCCCGC-GGCGUGCU-------GCACGa----GCGgc -5'
25720 3' -63.1 NC_005337.1 + 105211 0.67 0.506128
Target:  5'- cUGGGgGCCGCugaGCuGCGcGCUCGCgGg -3'
miRNA:   3'- uGCCCgCGGCG---UGcUGCaCGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 10571 0.67 0.487754
Target:  5'- cACGGGCgugcccagccGCCGCACGGCGU-C-CGUgGa -3'
miRNA:   3'- -UGCCCG----------CGGCGUGCUGCAcGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 21702 0.67 0.487754
Target:  5'- cCGcaCGCCGUggugaccaAgGACGUGCUCGCCa -3'
miRNA:   3'- uGCccGCGGCG--------UgCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 23936 0.67 0.506128
Target:  5'- gGCaGGCG-CGCGCGACGcGCcCgGCCGg -3'
miRNA:   3'- -UGcCCGCgGCGUGCUGCaCGaG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 42551 0.67 0.487754
Target:  5'- uGCGGGCGCUgGUGCGGC-UGCg-GCUGg -3'
miRNA:   3'- -UGCCCGCGG-CGUGCUGcACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 52647 0.67 0.487754
Target:  5'- gACGGGCGCaaGCACGAC--GCcUGCCu -3'
miRNA:   3'- -UGCCCGCGg-CGUGCUGcaCGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 87917 0.67 0.515427
Target:  5'- cGCGccuGCGCCgGCGCuuCGUGCaCGCCGg -3'
miRNA:   3'- -UGCc--CGCGG-CGUGcuGCACGaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.