miRNA display CGI


Results 81 - 100 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 101944 0.67 0.524793
Target:  5'- gACGagcuGCGcCCGCACGugGccugccGCUCGCUGu -3'
miRNA:   3'- -UGCc---CGC-GGCGUGCugCa-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 87917 0.67 0.515427
Target:  5'- cGCGccuGCGCCgGCGCuuCGUGCaCGCCGg -3'
miRNA:   3'- -UGCc--CGCGG-CGUGcuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 104308 0.67 0.496903
Target:  5'- -aGGGCGCgGCgGCGcucuGCGUGCguccCGUCGg -3'
miRNA:   3'- ugCCCGCGgCG-UGC----UGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 72407 0.67 0.515427
Target:  5'- -gGGGUGgCGCgACGuCGUGCacuacgagUCGCCGc -3'
miRNA:   3'- ugCCCGCgGCG-UGCuGCACG--------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127269 0.67 0.506128
Target:  5'- gGCGGGCgcggacguccgcGCCauggacaaGCACGGCGUcaccccGCUgGCCGu -3'
miRNA:   3'- -UGCCCG------------CGG--------CGUGCUGCA------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 23936 0.67 0.506128
Target:  5'- gGCaGGCG-CGCGCGACGcGCcCgGCCGg -3'
miRNA:   3'- -UGcCCGCgGCGUGCUGCaCGaG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 83511 0.67 0.487754
Target:  5'- cGCGGGaaCCGCACG-CGUGCgccCGCg- -3'
miRNA:   3'- -UGCCCgcGGCGUGCuGCACGa--GCGgc -5'
25720 3' -63.1 NC_005337.1 + 127044 0.67 0.533277
Target:  5'- gGCGGGCGCggaggugCGCACcgaaGGCGgGUUCGUCu -3'
miRNA:   3'- -UGCCCGCG-------GCGUG----CUGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 10278 0.67 0.534223
Target:  5'- gGCGGcGCGUucaGCAUGGCGcGCgcaucggCGCCGu -3'
miRNA:   3'- -UGCC-CGCGg--CGUGCUGCaCGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 43332 0.67 0.534223
Target:  5'- uCGGG-GCuCGC-CGACGcGCUgGCCGc -3'
miRNA:   3'- uGCCCgCG-GCGuGCUGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 29648 0.67 0.515427
Target:  5'- cACGGGCuCCGagauGCG-CGUGCUC-CCGc -3'
miRNA:   3'- -UGCCCGcGGCg---UGCuGCACGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 47794 0.67 0.515427
Target:  5'- -gGGGUGCUGCGC-ACGUGCgaccccucgCGCUu -3'
miRNA:   3'- ugCCCGCGGCGUGcUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 45201 0.67 0.507055
Target:  5'- -gGGGCGCUGUcgcucaugagucucGCGGCGgacgcggccuucgaGCUCGUCGg -3'
miRNA:   3'- ugCCCGCGGCG--------------UGCUGCa-------------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 52647 0.67 0.487754
Target:  5'- gACGGGCGCaaGCACGAC--GCcUGCCu -3'
miRNA:   3'- -UGCCCGCGg-CGUGCUGcaCGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 42551 0.67 0.487754
Target:  5'- uGCGGGCGCUgGUGCGGC-UGCg-GCUGg -3'
miRNA:   3'- -UGCCCGCGG-CGUGCUGcACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38255 0.67 0.487754
Target:  5'- gACGcGGCGCgCGUucgcgcucGCGGCGUucccGCUCGUCa -3'
miRNA:   3'- -UGC-CCGCG-GCG--------UGCUGCA----CGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 21702 0.67 0.487754
Target:  5'- cCGcaCGCCGUggugaccaAgGACGUGCUCGCCa -3'
miRNA:   3'- uGCccGCGGCG--------UgCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 10571 0.67 0.487754
Target:  5'- cACGGGCgugcccagccGCCGCACGGCGU-C-CGUgGa -3'
miRNA:   3'- -UGCCCG----------CGGCGUGCUGCAcGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 86208 0.67 0.523853
Target:  5'- cCGGGCucuGCacggagaGCACGGCGUcuauccgcgcgucGUUCGCCGc -3'
miRNA:   3'- uGCCCG---CGg------CGUGCUGCA-------------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 80720 0.67 0.534223
Target:  5'- cACGGG-GaaGCGCG-UGUGCUCGCg- -3'
miRNA:   3'- -UGCCCgCggCGUGCuGCACGAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.