Results 21 - 40 of 263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 35323 | 0.74 | 0.196693 |
Target: 5'- gAC-GGCGCCGCGgacccaGGCGUGCguggCGCCGa -3' miRNA: 3'- -UGcCCGCGGCGUg-----CUGCACGa---GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 74245 | 0.74 | 0.216193 |
Target: 5'- gGCGGGuCGCCGCGCGG-GUcuccGCgCGCCGa -3' miRNA: 3'- -UGCCC-GCGGCGUGCUgCA----CGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 15478 | 0.74 | 0.216193 |
Target: 5'- gACGGcgcGCGCgGCACGACGgcgccGC-CGCCGg -3' miRNA: 3'- -UGCC---CGCGgCGUGCUGCa----CGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 123869 | 0.74 | 0.192064 |
Target: 5'- gGCGGGCGCgGCGCGuACG-GCcUCGUCu -3' miRNA: 3'- -UGCCCGCGgCGUGC-UGCaCG-AGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 88233 | 0.73 | 0.237325 |
Target: 5'- gGCGGGCuGCUGCgaagACGuCGUGCgUGCCGg -3' miRNA: 3'- -UGCCCG-CGGCG----UGCuGCACGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 78553 | 0.73 | 0.231885 |
Target: 5'- cACGGGCGCgccgUGCGCGuCGUGCUUGaaGa -3' miRNA: 3'- -UGCCCGCG----GCGUGCuGCACGAGCggC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 122405 | 0.73 | 0.231885 |
Target: 5'- uGCGcGGCGgCGCGCGGCGccUGUccgCGCCGa -3' miRNA: 3'- -UGC-CCGCgGCGUGCUGC--ACGa--GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 110507 | 0.73 | 0.237325 |
Target: 5'- gACGuGGCGCuCGCGCGugGUGaacacggCGCCc -3' miRNA: 3'- -UGC-CCGCG-GCGUGCugCACga-----GCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 92655 | 0.72 | 0.272233 |
Target: 5'- cCGGGCGUCGCACcACG-GCcuccuUCGCCa -3' miRNA: 3'- uGCCCGCGGCGUGcUGCaCG-----AGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 108191 | 0.72 | 0.284753 |
Target: 5'- gGCGGcgcuuccccGCGCCGCGCuacauugcgguGGCGUGCgagccgcgcUCGCCGg -3' miRNA: 3'- -UGCC---------CGCGGCGUG-----------CUGCACG---------AGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 10006 | 0.72 | 0.260159 |
Target: 5'- gGCcGGCGCCGCcguCGuCGUGCUCGaucCCGg -3' miRNA: 3'- -UGcCCGCGGCGu--GCuGCACGAGC---GGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 106031 | 0.72 | 0.272233 |
Target: 5'- cGCGuGGUGCCGCGCGACG-GCguuUCGgUGa -3' miRNA: 3'- -UGC-CCGCGGCGUGCUGCaCG---AGCgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 92659 | 0.72 | 0.278437 |
Target: 5'- aACGaGGUGCUGCAcugcuuCGACGUGCUCaCCu -3' miRNA: 3'- -UGC-CCGCGGCGU------GCUGCACGAGcGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 35563 | 0.72 | 0.263735 |
Target: 5'- -aGGGCGCCGCGCGAgCGgaugccuagcgagGCggaucccCGCCGg -3' miRNA: 3'- ugCCCGCGGCGUGCU-GCa------------CGa------GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 127888 | 0.72 | 0.278437 |
Target: 5'- cGCGcGGCGCCGgcgaGCG-CGUGCggGCCGa -3' miRNA: 3'- -UGC-CCGCGGCg---UGCuGCACGagCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 69871 | 0.72 | 0.254287 |
Target: 5'- aGCGGcCGCUGCugGACcuGUGC-CGCCGc -3' miRNA: 3'- -UGCCcGCGGCGugCUG--CACGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 131010 | 0.72 | 0.284116 |
Target: 5'- cACGuGGcCGCCGCGCaccgcaacgacaaGGCGUGCgcgCGCCu -3' miRNA: 3'- -UGC-CC-GCGGCGUG-------------CUGCACGa--GCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 128493 | 0.72 | 0.254287 |
Target: 5'- cGCGGGCGUgCGuCGCGuACGUGgUCGCgCGg -3' miRNA: 3'- -UGCCCGCG-GC-GUGC-UGCACgAGCG-GC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 94857 | 0.72 | 0.266141 |
Target: 5'- aGCGGGCGCC-CGCG-CGUGUcgaacagCGCCu -3' miRNA: 3'- -UGCCCGCGGcGUGCuGCACGa------GCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 74536 | 0.71 | 0.31803 |
Target: 5'- cGCGGaGacgcgcucCGCCGCGCGGCGcgugaUGCUgGCCGc -3' miRNA: 3'- -UGCC-C--------GCGGCGUGCUGC-----ACGAgCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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