miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 29218 0.71 0.304379
Target:  5'- uGCGcaGCGCCGCGCGGCcggGCgUCGCCu -3'
miRNA:   3'- -UGCc-CGCGGCGUGCUGca-CG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 82627 0.71 0.311147
Target:  5'- gGCGGGCGCUG-GCGACc-GCggagCGCCGa -3'
miRNA:   3'- -UGCCCGCGGCgUGCUGcaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133537 0.71 0.31803
Target:  5'- cGCGGGCGCCGCGCu-----CUCGCCc -3'
miRNA:   3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 25344 0.71 0.297724
Target:  5'- -aGGGCGCCacguCGCGGCGcGuCUCGCUGg -3'
miRNA:   3'- ugCCCGCGGc---GUGCUGCaC-GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 3010 0.71 0.304379
Target:  5'- gACGGGCuCCGgcaGCG-CGUGCgCGCCGa -3'
miRNA:   3'- -UGCCCGcGGCg--UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38484 0.71 0.304379
Target:  5'- cCGGGCGCgCGCGuCGcCGaGCUgGCCGa -3'
miRNA:   3'- uGCCCGCG-GCGU-GCuGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 130785 0.71 0.311147
Target:  5'- cUGGGCGCCGCcgguGCGGC-UGCUgCGCUu -3'
miRNA:   3'- uGCCCGCGGCG----UGCUGcACGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 74536 0.71 0.31803
Target:  5'- cGCGGaGacgcgcucCGCCGCGCGGCGcgugaUGCUgGCCGc -3'
miRNA:   3'- -UGCC-C--------GCGGCGUGCUGC-----ACGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 99293 0.71 0.291182
Target:  5'- cCuGGCGCgGCGCGGCGUuccGCagCGCCGg -3'
miRNA:   3'- uGcCCGCGgCGUGCUGCA---CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 74619 0.71 0.325026
Target:  5'- cGCGGGCGCCGacaAgGugGUGCaC-CCGg -3'
miRNA:   3'- -UGCCCGCGGCg--UgCugCACGaGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 127405 0.71 0.322916
Target:  5'- gACGGGCGCaCGCugcugcaccaccugGCGAcCGUGC-CGCgGg -3'
miRNA:   3'- -UGCCCGCG-GCG--------------UGCU-GCACGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 76863 0.71 0.327857
Target:  5'- gACGGGCGuCCGgACGGCucggcggaaaucucgGgcagcaGCUCGCCGa -3'
miRNA:   3'- -UGCCCGC-GGCgUGCUG---------------Ca-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 115003 0.71 0.31803
Target:  5'- cAC-GGCGCuCGCcaaaggcuaccACGACGUGCUgGCCa -3'
miRNA:   3'- -UGcCCGCG-GCG-----------UGCUGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 25066 0.71 0.304379
Target:  5'- uGCGGGCggcguucgucaaGCUGCGCGACGccgaGCUcCGCCc -3'
miRNA:   3'- -UGCCCG------------CGGCGUGCUGCa---CGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 36535 0.7 0.369384
Target:  5'- cGCGGGCGUCcC-CGGCGgcuggGCggCGCCGg -3'
miRNA:   3'- -UGCCCGCGGcGuGCUGCa----CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39946 0.7 0.369384
Target:  5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 68490 0.7 0.339361
Target:  5'- cCGGGCGCCGCGCugcuGGCGgccGUgggugCGCCc -3'
miRNA:   3'- uGCCCGCGGCGUG----CUGCa--CGa----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 128322 0.7 0.339361
Target:  5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3'
miRNA:   3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 122208 0.7 0.346698
Target:  5'- cGCGGGCGCggaCGUGuCGGCGcGCaCGCCGg -3'
miRNA:   3'- -UGCCCGCG---GCGU-GCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 7477 0.7 0.345959
Target:  5'- -aGGGCG-CGCACGACGUccagguccacgggGCU-GCCGg -3'
miRNA:   3'- ugCCCGCgGCGUGCUGCA-------------CGAgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.