Results 61 - 80 of 263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 75259 | 0.7 | 0.360949 |
Target: 5'- aGCGGGCGCCacgaccGCACGGCGcucuugaUGCgCGCg- -3' miRNA: 3'- -UGCCCGCGG------CGUGCUGC-------ACGaGCGgc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 122208 | 0.7 | 0.346698 |
Target: 5'- cGCGGGCGCggaCGUGuCGGCGcGCaCGCCGg -3' miRNA: 3'- -UGCCCGCG---GCGU-GCUGCaCGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 39946 | 0.7 | 0.369384 |
Target: 5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3' miRNA: 3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 50985 | 0.7 | 0.364767 |
Target: 5'- -gGGGCGCCGCGCGuucguCGUcggcccggcccucgaGC-CGCCa -3' miRNA: 3'- ugCCCGCGGCGUGCu----GCA---------------CGaGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 86681 | 0.7 | 0.377169 |
Target: 5'- cGCGcGGCGUCGCccacgcccaGCGGCugcgGCUCGUCGg -3' miRNA: 3'- -UGC-CCGCGGCG---------UGCUGca--CGAGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 105094 | 0.7 | 0.349664 |
Target: 5'- cACGGGCGCCgccgcgucuccggaGCugGACGacgcgGCgcuccggacggccgUCGCCGa -3' miRNA: 3'- -UGCCCGCGG--------------CGugCUGCa----CG--------------AGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 105048 | 0.7 | 0.354148 |
Target: 5'- gGCaGGCgacgcccgGCCGCGCGGCGcUGCgcagCGCCu -3' miRNA: 3'- -UGcCCG--------CGGCGUGCUGC-ACGa---GCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 123668 | 0.7 | 0.377169 |
Target: 5'- cCuGGCGCCGCcgcucccccGCGGCGggaccggGCUCGUCGc -3' miRNA: 3'- uGcCCGCGGCG---------UGCUGCa------CGAGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 123695 | 0.7 | 0.36171 |
Target: 5'- cACGGaCGCCGUGCGGCGgcuggGCaCGCCc -3' miRNA: 3'- -UGCCcGCGGCGUGCUGCa----CGaGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 57206 | 0.7 | 0.36171 |
Target: 5'- uACGGGUGCCGCGCccgcgaaaacucGGCG-GCUaacgagGCCGu -3' miRNA: 3'- -UGCCCGCGGCGUG------------CUGCaCGAg-----CGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 127961 | 0.7 | 0.369384 |
Target: 5'- gGCGGagauccGCGCCauGCGCGAgGUGCgcugcaaCGCCGa -3' miRNA: 3'- -UGCC------CGCGG--CGUGCUgCACGa------GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 99165 | 0.7 | 0.377169 |
Target: 5'- gGCGuccGCGCCGCGCgGACGaUGCgCGUCGa -3' miRNA: 3'- -UGCc--CGCGGCGUG-CUGC-ACGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 131895 | 0.7 | 0.346698 |
Target: 5'- gGCGGGCG-CGCACGugGacGCggUCGaCCGg -3' miRNA: 3'- -UGCCCGCgGCGUGCugCa-CG--AGC-GGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 36535 | 0.7 | 0.369384 |
Target: 5'- cGCGGGCGUCcC-CGGCGgcuggGCggCGCCGg -3' miRNA: 3'- -UGCCCGCGGcGuGCUGCa----CGa-GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 118244 | 0.7 | 0.332137 |
Target: 5'- gGCaGGCGCCGCAgcGCGUGUaccUGCCGg -3' miRNA: 3'- -UGcCCGCGGCGUgcUGCACGa--GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 66637 | 0.7 | 0.332137 |
Target: 5'- gGCGGGCGgUGgGaGugGUGCggCGCCGa -3' miRNA: 3'- -UGCCCGCgGCgUgCugCACGa-GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 133716 | 0.7 | 0.332137 |
Target: 5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3' miRNA: 3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 64277 | 0.7 | 0.339361 |
Target: 5'- uCGGGCGaCUGCAUGAgGUGCaCGgCGg -3' miRNA: 3'- uGCCCGC-GGCGUGCUgCACGaGCgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 4456 | 0.7 | 0.339361 |
Target: 5'- aACGGGCGaaugaucgaCGCGCGGCagGUGCucugcaUCGCCa -3' miRNA: 3'- -UGCCCGCg--------GCGUGCUG--CACG------AGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 28484 | 0.7 | 0.377169 |
Target: 5'- cACGGauGCgGCCGCGCGGCGcGCggUCGCgCGg -3' miRNA: 3'- -UGCC--CG-CGGCGUGCUGCaCG--AGCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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