miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 11153 1.07 0.000869
Target:  5'- gACGGGCGCCGCACGACGUGCUCGCCGu -3'
miRNA:   3'- -UGCCCGCGGCGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 91904 0.82 0.054886
Target:  5'- cCGGGuCGCCGguCACGACGUGCgUCGCCGc -3'
miRNA:   3'- uGCCC-GCGGC--GUGCUGCACG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 46340 0.8 0.08275
Target:  5'- cCGGGCuGCCGC-CGGCGUGCacgaagCGCCGg -3'
miRNA:   3'- uGCCCG-CGGCGuGCUGCACGa-----GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 58017 0.79 0.089304
Target:  5'- cCGGGCgugcucggccagGCCGCgcucuucgacgGCGGCGUGCUCGCCa -3'
miRNA:   3'- uGCCCG------------CGGCG-----------UGCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 53660 0.79 0.091596
Target:  5'- cACGcGCGCUuCGCGGCGUGCUCGCUGg -3'
miRNA:   3'- -UGCcCGCGGcGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 97683 0.78 0.114881
Target:  5'- cGCGGGCG-UGCACGugGUGgacgucuucuuCUCGCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCAC-----------GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 105162 0.78 0.114881
Target:  5'- uGCuGGCGCUGCACGGCGUGgUCGaCCc -3'
miRNA:   3'- -UGcCCGCGGCGUGCUGCACgAGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 54108 0.77 0.133365
Target:  5'- uACGGGCGCUgcuacguggaGCGCGACG-GCcgCGCCGc -3'
miRNA:   3'- -UGCCCGCGG----------CGUGCUGCaCGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 126939 0.77 0.136701
Target:  5'- gGCGGGCGCggacgugaacgCGCGCGACGUGUgcggguacaCGCCa -3'
miRNA:   3'- -UGCCCGCG-----------GCGUGCUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 100707 0.76 0.142547
Target:  5'- gACGcGGCGCCGCGCucucgcaguucuucGACGUGCaCGUCGg -3'
miRNA:   3'- -UGC-CCGCGGCGUG--------------CUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 91193 0.76 0.147172
Target:  5'- cCGGGCGCCGCGaugcgGACGgGCgCGCCGc -3'
miRNA:   3'- uGCCCGCGGCGUg----CUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 101229 0.76 0.150822
Target:  5'- cGCGgaGGCGuCCGCGCG-CGUGCUCGCg- -3'
miRNA:   3'- -UGC--CCGC-GGCGUGCuGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 99539 0.76 0.158369
Target:  5'- cCGGuGCGCCGC-CGAC-UGCUCGCgCGa -3'
miRNA:   3'- uGCC-CGCGGCGuGCUGcACGAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 66770 0.75 0.162269
Target:  5'- cGCGcGG-GCCGCugGGCGUGCUCuCCa -3'
miRNA:   3'- -UGC-CCgCGGCGugCUGCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 50383 0.75 0.166256
Target:  5'- cACGGGCGCCugGCGCGGgG-GCgCGCCGc -3'
miRNA:   3'- -UGCCCGCGG--CGUGCUgCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 63111 0.75 0.17033
Target:  5'- cACGGGCGCCcCACGAUGcaggGCUCGgUGa -3'
miRNA:   3'- -UGCCCGCGGcGUGCUGCa---CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 6025 0.75 0.17033
Target:  5'- gGCGGGCGCCaGCAgGGcCGUGCgcaGCCc -3'
miRNA:   3'- -UGCCCGCGG-CGUgCU-GCACGag-CGGc -5'
25720 3' -63.1 NC_005337.1 + 14408 0.74 0.187083
Target:  5'- -gGaGGUugugcuuGCCGCGCGACGUGC-CGCCGc -3'
miRNA:   3'- ugC-CCG-------CGGCGUGCUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 123869 0.74 0.192064
Target:  5'- gGCGGGCGCgGCGCGuACG-GCcUCGUCu -3'
miRNA:   3'- -UGCCCGCGgCGUGC-UGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 34613 0.74 0.196226
Target:  5'- cACGGGCgcgcccaGCCGCGCGGCGaUGCcgCGCaCGu -3'
miRNA:   3'- -UGCCCG-------CGGCGUGCUGC-ACGa-GCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.