miRNA display CGI


Results 41 - 60 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 25344 0.71 0.297724
Target:  5'- -aGGGCGCCacguCGCGGCGcGuCUCGCUGg -3'
miRNA:   3'- ugCCCGCGGc---GUGCUGCaC-GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 3010 0.71 0.304379
Target:  5'- gACGGGCuCCGgcaGCG-CGUGCgCGCCGa -3'
miRNA:   3'- -UGCCCGcGGCg--UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 29218 0.71 0.304379
Target:  5'- uGCGcaGCGCCGCGCGGCcggGCgUCGCCu -3'
miRNA:   3'- -UGCc-CGCGGCGUGCUGca-CG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 38484 0.71 0.304379
Target:  5'- cCGGGCGCgCGCGuCGcCGaGCUgGCCGa -3'
miRNA:   3'- uGCCCGCG-GCGU-GCuGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 25066 0.71 0.304379
Target:  5'- uGCGGGCggcguucgucaaGCUGCGCGACGccgaGCUcCGCCc -3'
miRNA:   3'- -UGCCCG------------CGGCGUGCUGCa---CGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 130785 0.71 0.311147
Target:  5'- cUGGGCGCCGCcgguGCGGC-UGCUgCGCUu -3'
miRNA:   3'- uGCCCGCGGCG----UGCUGcACGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 82627 0.71 0.311147
Target:  5'- gGCGGGCGCUG-GCGACc-GCggagCGCCGa -3'
miRNA:   3'- -UGCCCGCGGCgUGCUGcaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133537 0.71 0.31803
Target:  5'- cGCGGGCGCCGCGCu-----CUCGCCc -3'
miRNA:   3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133537 0.71 0.31803
Target:  5'- cGCGGGCGCCGCGCu-----CUCGCCc -3'
miRNA:   3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 115003 0.71 0.31803
Target:  5'- cAC-GGCGCuCGCcaaaggcuaccACGACGUGCUgGCCa -3'
miRNA:   3'- -UGcCCGCG-GCG-----------UGCUGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 74536 0.71 0.31803
Target:  5'- cGCGGaGacgcgcucCGCCGCGCGGCGcgugaUGCUgGCCGc -3'
miRNA:   3'- -UGCC-C--------GCGGCGUGCUGC-----ACGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127405 0.71 0.322916
Target:  5'- gACGGGCGCaCGCugcugcaccaccugGCGAcCGUGC-CGCgGg -3'
miRNA:   3'- -UGCCCGCG-GCG--------------UGCU-GCACGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 74619 0.71 0.325026
Target:  5'- cGCGGGCGCCGacaAgGugGUGCaC-CCGg -3'
miRNA:   3'- -UGCCCGCGGCg--UgCugCACGaGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 76863 0.71 0.327857
Target:  5'- gACGGGCGuCCGgACGGCucggcggaaaucucgGgcagcaGCUCGCCGa -3'
miRNA:   3'- -UGCCCGC-GGCgUGCUG---------------Ca-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133716 0.7 0.332137
Target:  5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3'
miRNA:   3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133716 0.7 0.332137
Target:  5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3'
miRNA:   3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 66637 0.7 0.332137
Target:  5'- gGCGGGCGgUGgGaGugGUGCggCGCCGa -3'
miRNA:   3'- -UGCCCGCgGCgUgCugCACGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 118244 0.7 0.332137
Target:  5'- gGCaGGCGCCGCAgcGCGUGUaccUGCCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgcUGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 69122 0.7 0.332137
Target:  5'- uGCGGGCgaGCCGCgguccACGGCG-GC-CGCCu -3'
miRNA:   3'- -UGCCCG--CGGCG-----UGCUGCaCGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 128322 0.7 0.339361
Target:  5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3'
miRNA:   3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.