miRNA display CGI


Results 61 - 80 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 128322 0.7 0.339361
Target:  5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3'
miRNA:   3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 4456 0.7 0.339361
Target:  5'- aACGGGCGaaugaucgaCGCGCGGCagGUGCucugcaUCGCCa -3'
miRNA:   3'- -UGCCCGCg--------GCGUGCUG--CACG------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 64277 0.7 0.339361
Target:  5'- uCGGGCGaCUGCAUGAgGUGCaCGgCGg -3'
miRNA:   3'- uGCCCGC-GGCGUGCUgCACGaGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 7477 0.7 0.345959
Target:  5'- -aGGGCG-CGCACGACGUccagguccacgggGCU-GCCGg -3'
miRNA:   3'- ugCCCGCgGCGUGCUGCA-------------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 93041 0.7 0.346698
Target:  5'- cAUGGGCGaggacCUGUACGugGUGCUCuCCu -3'
miRNA:   3'- -UGCCCGC-----GGCGUGCugCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 122208 0.7 0.346698
Target:  5'- cGCGGGCGCggaCGUGuCGGCGcGCaCGCCGg -3'
miRNA:   3'- -UGCCCGCG---GCGU-GCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 131895 0.7 0.346698
Target:  5'- gGCGGGCG-CGCACGugGacGCggUCGaCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCa-CG--AGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 105094 0.7 0.349664
Target:  5'- cACGGGCGCCgccgcgucuccggaGCugGACGacgcgGCgcuccggacggccgUCGCCGa -3'
miRNA:   3'- -UGCCCGCGG--------------CGugCUGCa----CG--------------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 105048 0.7 0.354148
Target:  5'- gGCaGGCgacgcccgGCCGCGCGGCGcUGCgcagCGCCu -3'
miRNA:   3'- -UGcCCG--------CGGCGUGCUGC-ACGa---GCGGc -5'
25720 3' -63.1 NC_005337.1 + 75259 0.7 0.360949
Target:  5'- aGCGGGCGCCacgaccGCACGGCGcucuugaUGCgCGCg- -3'
miRNA:   3'- -UGCCCGCGG------CGUGCUGC-------ACGaGCGgc -5'
25720 3' -63.1 NC_005337.1 + 123695 0.7 0.36171
Target:  5'- cACGGaCGCCGUGCGGCGgcuggGCaCGCCc -3'
miRNA:   3'- -UGCCcGCGGCGUGCUGCa----CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 57206 0.7 0.36171
Target:  5'- uACGGGUGCCGCGCccgcgaaaacucGGCG-GCUaacgagGCCGu -3'
miRNA:   3'- -UGCCCGCGGCGUG------------CUGCaCGAg-----CGGC- -5'
25720 3' -63.1 NC_005337.1 + 50985 0.7 0.364767
Target:  5'- -gGGGCGCCGCGCGuucguCGUcggcccggcccucgaGC-CGCCa -3'
miRNA:   3'- ugCCCGCGGCGUGCu----GCA---------------CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 39946 0.7 0.369384
Target:  5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 127961 0.7 0.369384
Target:  5'- gGCGGagauccGCGCCauGCGCGAgGUGCgcugcaaCGCCGa -3'
miRNA:   3'- -UGCC------CGCGG--CGUGCUgCACGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36535 0.7 0.369384
Target:  5'- cGCGGGCGUCcC-CGGCGgcuggGCggCGCCGg -3'
miRNA:   3'- -UGCCCGCGGcGuGCUGCa----CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 28484 0.7 0.377169
Target:  5'- cACGGauGCgGCCGCGCGGCGcGCggUCGCgCGg -3'
miRNA:   3'- -UGCC--CG-CGGCGUGCUGCaCG--AGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 123668 0.7 0.377169
Target:  5'- cCuGGCGCCGCcgcucccccGCGGCGggaccggGCUCGUCGc -3'
miRNA:   3'- uGcCCGCGGCG---------UGCUGCa------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 99165 0.7 0.377169
Target:  5'- gGCGuccGCGCCGCGCgGACGaUGCgCGUCGa -3'
miRNA:   3'- -UGCc--CGCGGCGUG-CUGC-ACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 86681 0.7 0.377169
Target:  5'- cGCGcGGCGUCGCccacgcccaGCGGCugcgGCUCGUCGg -3'
miRNA:   3'- -UGC-CCGCGGCG---------UGCUGca--CGAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.