miRNA display CGI


Results 81 - 100 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 94149 0.7 0.377169
Target:  5'- -gGGGCGgCGCcuccccACGACGgagaaccGCUUGCCGa -3'
miRNA:   3'- ugCCCGCgGCG------UGCUGCa------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 87822 0.69 0.382684
Target:  5'- cGCGGcGCGCCGCGCGcagaucgcgaACaucauccacgaccgGUGCaUCGCCa -3'
miRNA:   3'- -UGCC-CGCGGCGUGC----------UG--------------CACG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 11616 0.69 0.382684
Target:  5'- gGCGGGCcaccugcucgacgaGUCGCgucuuGCGGCgGUGCUCGCgGa -3'
miRNA:   3'- -UGCCCG--------------CGGCG-----UGCUG-CACGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 36006 0.69 0.384269
Target:  5'- aGCGGGUGaCCaccgucguggacgGCGacacggacugccCGACGUGCUCGUCGu -3'
miRNA:   3'- -UGCCCGC-GG-------------CGU------------GCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39473 0.69 0.385063
Target:  5'- gACGccuccGUGCCGCGCGACGcGCgcgCGCUGc -3'
miRNA:   3'- -UGCc----CGCGGCGUGCUGCaCGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 47489 0.69 0.385063
Target:  5'- cGCGGGaccuGCCGC-CGccCGUGCggaCGCCGg -3'
miRNA:   3'- -UGCCCg---CGGCGuGCu-GCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 117030 0.69 0.385063
Target:  5'- cCGGGCGCUGC-CGACGcUGCagGUgGa -3'
miRNA:   3'- uGCCCGCGGCGuGCUGC-ACGagCGgC- -5'
25720 3' -63.1 NC_005337.1 + 57269 0.69 0.390654
Target:  5'- cACGGG-GCCGCGCGGgGccggcgcgcgcggcUGCggCGCCGc -3'
miRNA:   3'- -UGCCCgCGGCGUGCUgC--------------ACGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100258 0.69 0.393066
Target:  5'- -aGGGCGCCGaGCGG-GUGCUccuccugaCGCCGc -3'
miRNA:   3'- ugCCCGCGGCgUGCUgCACGA--------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 8146 0.69 0.393066
Target:  5'- cCGGGCauggccGCgCGCACGGCGUGCgCGUa- -3'
miRNA:   3'- uGCCCG------CG-GCGUGCUGCACGaGCGgc -5'
25720 3' -63.1 NC_005337.1 + 36890 0.69 0.393066
Target:  5'- uGCGGuucGCGCgGCGCGGCGUGgC-CGUCa -3'
miRNA:   3'- -UGCC---CGCGgCGUGCUGCAC-GaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 57104 0.69 0.393066
Target:  5'- cGCGGGUGgCGC-CGGCaguaccccGUGgUCGCCGc -3'
miRNA:   3'- -UGCCCGCgGCGuGCUG--------CACgAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 88509 0.69 0.398732
Target:  5'- cAUGGacaGCGCCGCGCGGuacgaacgcggggcCGUGCUagacggCGCCGu -3'
miRNA:   3'- -UGCC---CGCGGCGUGCU--------------GCACGA------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38821 0.69 0.400361
Target:  5'- -gGGGCGCuacgccgCGCugGACGcGUaCGCCGg -3'
miRNA:   3'- ugCCCGCG-------GCGugCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 8986 0.69 0.401177
Target:  5'- cGCGGGCGCCGCAUaGGCaUGCaUC-CUGu -3'
miRNA:   3'- -UGCCCGCGGCGUG-CUGcACG-AGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 59721 0.69 0.401177
Target:  5'- cGCGGccagcaucacGCGCCGCGCGGCGgaGCgCGUCu -3'
miRNA:   3'- -UGCC----------CGCGGCGUGCUGCa-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.