miRNA display CGI


Results 101 - 120 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 103332 0.69 0.412708
Target:  5'- cCGGGCGgcucacccgcCCGCugcugguggucgagaACGGCGUGCUCGUg- -3'
miRNA:   3'- uGCCCGC----------GGCG---------------UGCUGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 62962 0.69 0.414372
Target:  5'- cGCGGGuCGCCGCcgACGagaaguGCGUGCggaagcgcaccagCGCCa -3'
miRNA:   3'- -UGCCC-GCGGCG--UGC------UGCACGa------------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 132602 0.69 0.415206
Target:  5'- cCGGGCaCCGCaACGACGcgGCggcggccaagcucgUCGCCGc -3'
miRNA:   3'- uGCCCGcGGCG-UGCUGCa-CG--------------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 55993 0.69 0.417712
Target:  5'- uGCGGGCGaCCuCGCuGGCGggGCucaUCGCCGa -3'
miRNA:   3'- -UGCCCGC-GGcGUG-CUGCa-CG---AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 111129 0.69 0.417712
Target:  5'- cACGGGCGUgaagaGCAgGAUGUGCUUGaagCGg -3'
miRNA:   3'- -UGCCCGCGg----CGUgCUGCACGAGCg--GC- -5'
25720 3' -63.1 NC_005337.1 + 13303 0.69 0.417712
Target:  5'- gGCGGGC-UCGCAguggcccuUGGCGUcgauGCUCGCCa -3'
miRNA:   3'- -UGCCCGcGGCGU--------GCUGCA----CGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 86413 0.69 0.417712
Target:  5'- uGCGucCGCCGCGCccGACGUGCacUCGCgGa -3'
miRNA:   3'- -UGCccGCGGCGUG--CUGCACG--AGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 25416 0.69 0.417712
Target:  5'- uCGGGUuccGCuCGCACGACG-GCgugUCGCCc -3'
miRNA:   3'- uGCCCG---CG-GCGUGCUGCaCG---AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 77205 0.69 0.423597
Target:  5'- aGCGGGCGCuCGCagagcggccuggcuGCGGCGUaGUacgCGCCc -3'
miRNA:   3'- -UGCCCGCG-GCG--------------UGCUGCA-CGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 99654 0.69 0.426135
Target:  5'- cGCGGcauCGCCGCGCGGCuggGCgCGCCc -3'
miRNA:   3'- -UGCCc--GCGGCGUGCUGca-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 25274 0.68 0.434657
Target:  5'- aACGcGGCGCuggaguucgcgCGCACGGCGgGCggGCCGc -3'
miRNA:   3'- -UGC-CCGCG-----------GCGUGCUGCaCGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 53846 0.68 0.434657
Target:  5'- gGCuGGCGCUGCGCGccGCGgacgGCUCcuGCUGg -3'
miRNA:   3'- -UGcCCGCGGCGUGC--UGCa---CGAG--CGGC- -5'
25720 3' -63.1 NC_005337.1 + 39559 0.68 0.434657
Target:  5'- gGCGGGCGCUcggGUACucguccuCGUGgaCGCCGa -3'
miRNA:   3'- -UGCCCGCGG---CGUGcu-----GCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 66311 0.68 0.434657
Target:  5'- cGCGuGaGCGCCGCggucgcgggcugGCGAcaCGUGCUCGUgGa -3'
miRNA:   3'- -UGC-C-CGCGGCG------------UGCU--GCACGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 130693 0.68 0.440681
Target:  5'- -gGGGCGCUGCucaaguccccguccGCGuGCGUggaGCUCGUCGa -3'
miRNA:   3'- ugCCCGCGGCG--------------UGC-UGCA---CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 40826 0.68 0.442411
Target:  5'- gGCGGGCgucuuccgcaugaGCCGCACGGgacacGCgUCGCCGu -3'
miRNA:   3'- -UGCCCG-------------CGGCGUGCUgca--CG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 42760 0.68 0.443277
Target:  5'- uGCGGGUcCCGCGCGuucgUGUGCUCgGgCGg -3'
miRNA:   3'- -UGCCCGcGGCGUGCu---GCACGAG-CgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.