miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 78980 0.66 0.582165
Target:  5'- uGCGGuGCGUgGCGCGGC-UGUagGCCc -3'
miRNA:   3'- -UGCC-CGCGgCGUGCUGcACGagCGGc -5'
25720 3' -63.1 NC_005337.1 + 27921 0.66 0.582165
Target:  5'- -gGGGCGCgCGauCugGACGgucauuucaucgUGCUgCGCCGg -3'
miRNA:   3'- ugCCCGCG-GC--GugCUGC------------ACGA-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 989 0.66 0.582165
Target:  5'- gGCGcGGCGCgCGgAgGGCGgGCgUCGCCu -3'
miRNA:   3'- -UGC-CCGCG-GCgUgCUGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 34982 0.66 0.582165
Target:  5'- uGCGGaacgccGCGCCGCgccaggcagACGGcCGUGCcgaaccccgcgUCGCCGu -3'
miRNA:   3'- -UGCC------CGCGGCG---------UGCU-GCACG-----------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 52366 0.66 0.582165
Target:  5'- gACGGG-GCCGCugACGGC-UGCgggGCCGu -3'
miRNA:   3'- -UGCCCgCGGCG--UGCUGcACGag-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 989 0.66 0.582165
Target:  5'- gGCGcGGCGCgCGgAgGGCGgGCgUCGCCu -3'
miRNA:   3'- -UGC-CCGCG-GCgUgCUGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 65351 0.66 0.582165
Target:  5'- uACGGGUcgauGCCGCACacgcacACGcGCUUGUCGc -3'
miRNA:   3'- -UGCCCG----CGGCGUGc-----UGCaCGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 95305 0.66 0.582165
Target:  5'- -aGGcGCGCgGCGCGcUGUugcGCUCGUCGu -3'
miRNA:   3'- ugCC-CGCGgCGUGCuGCA---CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 29773 0.66 0.582165
Target:  5'- cCGGGCGUCcggguGCGCGagcGCGUaGCagCGCCGc -3'
miRNA:   3'- uGCCCGCGG-----CGUGC---UGCA-CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 6908 0.66 0.581195
Target:  5'- cGCGGGU-CCGCGcCGGCGcGCagcaucaUCGCCa -3'
miRNA:   3'- -UGCCCGcGGCGU-GCUGCaCG-------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 49447 0.66 0.581195
Target:  5'- cGCGGcCGCgUGCGCGAUGcuggcguUGCUgGCCGc -3'
miRNA:   3'- -UGCCcGCG-GCGUGCUGC-------ACGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36780 0.66 0.581195
Target:  5'- cGCGGaccucguGCGacCCGCugGGCGUcagccGCgUCGCCGg -3'
miRNA:   3'- -UGCC-------CGC--GGCGugCUGCA-----CG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 48919 0.66 0.573454
Target:  5'- cACGGGCaCCGCguccggcaacugcgGCgugaaggcggugaugGACGUGCUgGCCa -3'
miRNA:   3'- -UGCCCGcGGCG--------------UG---------------CUGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 128020 0.66 0.572488
Target:  5'- cGCcGGCGCCaGCgucaGCGACGcUGaCUCGCgCGg -3'
miRNA:   3'- -UGcCCGCGG-CG----UGCUGC-AC-GAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 1090 0.66 0.572488
Target:  5'- aGCGGGCuacaGCCgGCGCaGCGccGC-CGCCGg -3'
miRNA:   3'- -UGCCCG----CGG-CGUGcUGCa-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 112395 0.66 0.572488
Target:  5'- -aGGaGCGCCGCGCaGGcCGUGCgguagGCCu -3'
miRNA:   3'- ugCC-CGCGGCGUG-CU-GCACGag---CGGc -5'
25720 3' -63.1 NC_005337.1 + 1090 0.66 0.572488
Target:  5'- aGCGGGCuacaGCCgGCGCaGCGccGC-CGCCGg -3'
miRNA:   3'- -UGCCCG----CGG-CGUGcUGCa-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 63212 0.66 0.572488
Target:  5'- gACGGcGCGgCGCAgGuGCaUGUUCGCCa -3'
miRNA:   3'- -UGCC-CGCgGCGUgC-UGcACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 42807 0.66 0.572488
Target:  5'- ---cGCGaaGCACGGgauCGUGCUCGCCc -3'
miRNA:   3'- ugccCGCggCGUGCU---GCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 36204 0.66 0.569593
Target:  5'- cGCGGGUucgucguuuuuugcGCCGgcCGCGGCGcGCUC-CCGg -3'
miRNA:   3'- -UGCCCG--------------CGGC--GUGCUGCaCGAGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.