Results 41 - 60 of 263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 39428 | 0.66 | 0.562851 |
Target: 5'- cGCGGGCGcCCGCuCGGgcCGcGCUCGgUGc -3' miRNA: 3'- -UGCCCGC-GGCGuGCU--GCaCGAGCgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 13171 | 0.66 | 0.562851 |
Target: 5'- cGCGGGCGCCGCGucCGccucGCG-GUUCacggggaugauGCCGu -3' miRNA: 3'- -UGCCCGCGGCGU--GC----UGCaCGAG-----------CGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 45030 | 0.66 | 0.562851 |
Target: 5'- aGCGuGGacuGCCGCACGAUGcuccgcaagcUGggCGCCGg -3' miRNA: 3'- -UGC-CCg--CGGCGUGCUGC----------ACgaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 72858 | 0.66 | 0.562851 |
Target: 5'- uGCGGcuguccGCGaacCUGCugGACGUGCaCGCCu -3' miRNA: 3'- -UGCC------CGC---GGCGugCUGCACGaGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 13888 | 0.66 | 0.562851 |
Target: 5'- aACGaccacGUGCCGCACGAgcCGgcagGCgCGCCGg -3' miRNA: 3'- -UGCc----CGCGGCGUGCU--GCa---CGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 38896 | 0.66 | 0.562851 |
Target: 5'- cGCGcGCGUCGCGCGGcCGUcGCUguUGCCu -3' miRNA: 3'- -UGCcCGCGGCGUGCU-GCA-CGA--GCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 91465 | 0.66 | 0.562851 |
Target: 5'- cUGGGCGa-GCACGAuccCGUGCuUCGCgGc -3' miRNA: 3'- uGCCCGCggCGUGCU---GCACG-AGCGgC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 43904 | 0.66 | 0.562851 |
Target: 5'- cGCGcGGCcggaagagGCCGCGCGuaACGgccGCUgGCCGc -3' miRNA: 3'- -UGC-CCG--------CGGCGUGC--UGCa--CGAgCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 68420 | 0.66 | 0.562851 |
Target: 5'- aGCGcGCGCCGCcgACGACGaguccGCUCucggaGCCGc -3' miRNA: 3'- -UGCcCGCGGCG--UGCUGCa----CGAG-----CGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 43692 | 0.66 | 0.559968 |
Target: 5'- gGCGGaCGCCG-ACGACGgaccgGCcgacgacggcgacuUCGCCGa -3' miRNA: 3'- -UGCCcGCGGCgUGCUGCa----CG--------------AGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 68323 | 0.66 | 0.553257 |
Target: 5'- -aGGaGgGCgGCACGcGCGUGCccgUGCCGg -3' miRNA: 3'- ugCC-CgCGgCGUGC-UGCACGa--GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 132284 | 0.66 | 0.553257 |
Target: 5'- uGCGGuCGuCCGaCGCGACGcuggaGCUCGuCCGg -3' miRNA: 3'- -UGCCcGC-GGC-GUGCUGCa----CGAGC-GGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 38358 | 0.66 | 0.553257 |
Target: 5'- cGCGaGGCG-CGCGCGGCc-GCcgUCGCCGc -3' miRNA: 3'- -UGC-CCGCgGCGUGCUGcaCG--AGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 131324 | 0.66 | 0.553257 |
Target: 5'- gGCGGagaccGCGCUcauGCGCGcCGUGCgCGUCGg -3' miRNA: 3'- -UGCC-----CGCGG---CGUGCuGCACGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 40038 | 0.66 | 0.553257 |
Target: 5'- aGCGGGCGUCGuCGCG--GUGC--GCCGa -3' miRNA: 3'- -UGCCCGCGGC-GUGCugCACGagCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 111561 | 0.66 | 0.553257 |
Target: 5'- gGC-GGUGCCGUagACGAgGUGCgacaugaacgCGCCGu -3' miRNA: 3'- -UGcCCGCGGCG--UGCUgCACGa---------GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 80170 | 0.66 | 0.553257 |
Target: 5'- uACGGGCcguGCCgGCGCgcgGACGcGCUCcuGCCGc -3' miRNA: 3'- -UGCCCG---CGG-CGUG---CUGCaCGAG--CGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 65796 | 0.66 | 0.553257 |
Target: 5'- aGCGcGGCGCCcgGUGCGGCG-GCgucgaaggUGCCGu -3' miRNA: 3'- -UGC-CCGCGG--CGUGCUGCaCGa-------GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 33616 | 0.66 | 0.553257 |
Target: 5'- aACGcGGCGUgGUucACGAUGUGCUUgGUCGu -3' miRNA: 3'- -UGC-CCGCGgCG--UGCUGCACGAG-CGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 96100 | 0.66 | 0.553257 |
Target: 5'- cGCGGGCGCgGCGgagGACaUGCg-GCCGc -3' miRNA: 3'- -UGCCCGCGgCGUg--CUGcACGagCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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