miRNA display CGI


Results 61 - 80 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 33616 0.66 0.553257
Target:  5'- aACGcGGCGUgGUucACGAUGUGCUUgGUCGu -3'
miRNA:   3'- -UGC-CCGCGgCG--UGCUGCACGAG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 109391 0.66 0.552301
Target:  5'- cGCGGGUcuggcguGCCGUccacagacACGGCGUGCgCGaCCa -3'
miRNA:   3'- -UGCCCG-------CGGCG--------UGCUGCACGaGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 10416 0.66 0.552301
Target:  5'- uGCGGcuGCGCCcaggaggacgccuGCGCGGCGgUGCgcgCGUCGu -3'
miRNA:   3'- -UGCC--CGCGG-------------CGUGCUGC-ACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100550 0.67 0.543713
Target:  5'- -gGGGUGCUGCGCGACc-GCauccucggCGCCa -3'
miRNA:   3'- ugCCCGCGGCGUGCUGcaCGa-------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 23757 0.67 0.543713
Target:  5'- gUGGGCGCCGUguucACcACGcGCgagCGCCa -3'
miRNA:   3'- uGCCCGCGGCG----UGcUGCaCGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 95579 0.67 0.543713
Target:  5'- gACGGGcCGCCGCcgacaccagGCGGCGaacagcgucUGCUgcaCGUCGg -3'
miRNA:   3'- -UGCCC-GCGGCG---------UGCUGC---------ACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 68205 0.67 0.534223
Target:  5'- -gGGGCGCCGCu--GCGgGCcCGCCu -3'
miRNA:   3'- ugCCCGCGGCGugcUGCaCGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 121690 0.67 0.534223
Target:  5'- cGCGGGCGCCaacgugaacgcGCGCGGgGagGCggacaagaCGCCGc -3'
miRNA:   3'- -UGCCCGCGG-----------CGUGCUgCa-CGa-------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 77074 0.67 0.534223
Target:  5'- cGCGGGCGCgGCACc-CGUa--CGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGUGcuGCAcgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 1712 0.67 0.534223
Target:  5'- gGCGaGGCGCCGUAcCGcACGUucaGCgCGUCGa -3'
miRNA:   3'- -UGC-CCGCGGCGU-GC-UGCA---CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 4909 0.67 0.534223
Target:  5'- aACGGGCGgUGgACGACG-GcCUC-CCGg -3'
miRNA:   3'- -UGCCCGCgGCgUGCUGCaC-GAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 101352 0.67 0.534223
Target:  5'- cACGGGCGCCaucgaGCAC-ACGgUGUuccccUCGCUGa -3'
miRNA:   3'- -UGCCCGCGG-----CGUGcUGC-ACG-----AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 10278 0.67 0.534223
Target:  5'- gGCGGcGCGUucaGCAUGGCGcGCgcaucggCGCCGu -3'
miRNA:   3'- -UGCC-CGCGg--CGUGCUGCaCGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 43332 0.67 0.534223
Target:  5'- uCGGG-GCuCGC-CGACGcGCUgGCCGc -3'
miRNA:   3'- uGCCCgCG-GCGuGCUGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 80720 0.67 0.534223
Target:  5'- cACGGG-GaaGCGCG-UGUGCUCGCg- -3'
miRNA:   3'- -UGCCCgCggCGUGCuGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 95500 0.67 0.534223
Target:  5'- uCGGGCGCgucgggcuccacCGCGCacCG-GCUCGCCa -3'
miRNA:   3'- uGCCCGCG------------GCGUGcuGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 127044 0.67 0.533277
Target:  5'- gGCGGGCGCggaggugCGCACcgaaGGCGgGUUCGUCu -3'
miRNA:   3'- -UGCCCGCG-------GCGUG----CUGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 108651 0.67 0.533277
Target:  5'- gGCGGGCGaCCGCGCGGacgaaacCGUGUccuucCGCa- -3'
miRNA:   3'- -UGCCCGC-GGCGUGCU-------GCACGa----GCGgc -5'
25720 3' -63.1 NC_005337.1 + 110319 0.67 0.533277
Target:  5'- -gGGcGCGCCGUucggcccggccggGCGGCGUcGCgcgCGCCu -3'
miRNA:   3'- ugCC-CGCGGCG-------------UGCUGCA-CGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 5763 0.67 0.524793
Target:  5'- gGCGGGCggcaGCCGCGCGAccaCGUacGCgacgcaCGCCc -3'
miRNA:   3'- -UGCCCG----CGGCGUGCU---GCA--CGa-----GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.