miRNA display CGI


Results 81 - 100 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 50723 0.67 0.524793
Target:  5'- cGCGGGacuGCCGUcccGCGACGagacgaUGCUCGUg- -3'
miRNA:   3'- -UGCCCg--CGGCG---UGCUGC------ACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 5763 0.67 0.524793
Target:  5'- gGCGGGCggcaGCCGCGCGAccaCGUacGCgacgcaCGCCc -3'
miRNA:   3'- -UGCCCG----CGGCGUGCU---GCA--CGa-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 101944 0.67 0.524793
Target:  5'- gACGagcuGCGcCCGCACGugGccugccGCUCGCUGu -3'
miRNA:   3'- -UGCc---CGC-GGCGUGCugCa-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 86208 0.67 0.523853
Target:  5'- cCGGGCucuGCacggagaGCACGGCGUcuauccgcgcgucGUUCGCCGc -3'
miRNA:   3'- uGCCCG---CGg------CGUGCUGCA-------------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 122356 0.67 0.515427
Target:  5'- cCGGGUGCCGCaucggacgccacGCGcAUGUGCgugCGCg- -3'
miRNA:   3'- uGCCCGCGGCG------------UGC-UGCACGa--GCGgc -5'
25720 3' -63.1 NC_005337.1 + 87917 0.67 0.515427
Target:  5'- cGCGccuGCGCCgGCGCuuCGUGCaCGCCGg -3'
miRNA:   3'- -UGCc--CGCGG-CGUGcuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 72407 0.67 0.515427
Target:  5'- -gGGGUGgCGCgACGuCGUGCacuacgagUCGCCGc -3'
miRNA:   3'- ugCCCGCgGCG-UGCuGCACG--------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 29648 0.67 0.515427
Target:  5'- cACGGGCuCCGagauGCG-CGUGCUC-CCGc -3'
miRNA:   3'- -UGCCCGcGGCg---UGCuGCACGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 83368 0.67 0.515427
Target:  5'- uGCGGaccgGCCGCugGGCGcGCgcgccCGCCGa -3'
miRNA:   3'- -UGCCcg--CGGCGugCUGCaCGa----GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38907 0.67 0.515427
Target:  5'- cUGGGCuucGUCgGCACGACG-GCUCcCCGg -3'
miRNA:   3'- uGCCCG---CGG-CGUGCUGCaCGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 47794 0.67 0.515427
Target:  5'- -gGGGUGCUGCGC-ACGUGCgaccccucgCGCUu -3'
miRNA:   3'- ugCCCGCGGCGUGcUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 45201 0.67 0.507055
Target:  5'- -gGGGCGCUGUcgcucaugagucucGCGGCGgacgcggccuucgaGCUCGUCGg -3'
miRNA:   3'- ugCCCGCGGCG--------------UGCUGCa-------------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 49734 0.67 0.506128
Target:  5'- aGCGGGaCGCCGgAC-ACG-GUgCGCCGg -3'
miRNA:   3'- -UGCCC-GCGGCgUGcUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 23936 0.67 0.506128
Target:  5'- gGCaGGCG-CGCGCGACGcGCcCgGCCGg -3'
miRNA:   3'- -UGcCCGCgGCGUGCUGCaCGaG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 105211 0.67 0.506128
Target:  5'- cUGGGgGCCGCugaGCuGCGcGCUCGCgGg -3'
miRNA:   3'- uGCCCgCGGCG---UGcUGCaCGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 127269 0.67 0.506128
Target:  5'- gGCGGGCgcggacguccgcGCCauggacaaGCACGGCGUcaccccGCUgGCCGu -3'
miRNA:   3'- -UGCCCG------------CGG--------CGUGCUGCA------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 46025 0.67 0.506128
Target:  5'- cCGGcGCGCCggcacGCACGACGUcUUCGCa- -3'
miRNA:   3'- uGCC-CGCGG-----CGUGCUGCAcGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 26751 0.67 0.506128
Target:  5'- cCGGuCGCCGCGaaACGUGgUCGUCGu -3'
miRNA:   3'- uGCCcGCGGCGUgcUGCACgAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 16759 0.67 0.506128
Target:  5'- cACGGcGCGCCgGCugAUGuCGUGCaccgcgUCGCCGu -3'
miRNA:   3'- -UGCC-CGCGG-CG--UGCuGCACG------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 66093 0.67 0.506128
Target:  5'- gGCGgaGGCGCUGUGCGGCGUcuGCgCGCgCGu -3'
miRNA:   3'- -UGC--CCGCGGCGUGCUGCA--CGaGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.