miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 989 0.66 0.582165
Target:  5'- gGCGcGGCGCgCGgAgGGCGgGCgUCGCCu -3'
miRNA:   3'- -UGC-CCGCG-GCgUgCUGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 989 0.66 0.582165
Target:  5'- gGCGcGGCGCgCGgAgGGCGgGCgUCGCCu -3'
miRNA:   3'- -UGC-CCGCG-GCgUgCUGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 1090 0.66 0.572488
Target:  5'- aGCGGGCuacaGCCgGCGCaGCGccGC-CGCCGg -3'
miRNA:   3'- -UGCCCG----CGG-CGUGcUGCa-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 1090 0.66 0.572488
Target:  5'- aGCGGGCuacaGCCgGCGCaGCGccGC-CGCCGg -3'
miRNA:   3'- -UGCCCG----CGG-CGUGcUGCa-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 1644 0.66 0.591873
Target:  5'- uGCGcGCGcCCGCgGCGACGaGCUUgGCCGc -3'
miRNA:   3'- -UGCcCGC-GGCG-UGCUGCaCGAG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 1712 0.67 0.534223
Target:  5'- gGCGaGGCGCCGUAcCGcACGUucaGCgCGUCGa -3'
miRNA:   3'- -UGC-CCGCGGCGU-GC-UGCA---CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 3010 0.71 0.304379
Target:  5'- gACGGGCuCCGgcaGCG-CGUGCgCGCCGa -3'
miRNA:   3'- -UGCCCGcGGCg--UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 4456 0.7 0.339361
Target:  5'- aACGGGCGaaugaucgaCGCGCGGCagGUGCucugcaUCGCCa -3'
miRNA:   3'- -UGCCCGCg--------GCGUGCUG--CACG------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 4582 0.69 0.409392
Target:  5'- cGCGGGCGCgGCgacuGCG-CGUGCUgGUg- -3'
miRNA:   3'- -UGCCCGCGgCG----UGCuGCACGAgCGgc -5'
25720 3' -63.1 NC_005337.1 + 4909 0.67 0.534223
Target:  5'- aACGGGCGgUGgACGACG-GcCUC-CCGg -3'
miRNA:   3'- -UGCCCGCgGCgUGCUGCaC-GAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 5763 0.67 0.524793
Target:  5'- gGCGGGCggcaGCCGCGCGAccaCGUacGCgacgcaCGCCc -3'
miRNA:   3'- -UGCCCG----CGGCGUGCU---GCA--CGa-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 6025 0.75 0.17033
Target:  5'- gGCGGGCGCCaGCAgGGcCGUGCgcaGCCc -3'
miRNA:   3'- -UGCCCGCGG-CGUgCU-GCACGag-CGGc -5'
25720 3' -63.1 NC_005337.1 + 6908 0.66 0.581195
Target:  5'- cGCGGGU-CCGCGcCGGCGcGCagcaucaUCGCCa -3'
miRNA:   3'- -UGCCCGcGGCGU-GCUGCaCG-------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 7477 0.7 0.345959
Target:  5'- -aGGGCG-CGCACGACGUccagguccacgggGCU-GCCGg -3'
miRNA:   3'- ugCCCGCgGCGUGCUGCA-------------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 7839 0.68 0.451993
Target:  5'- cGCGGugguacacGCGCaCGCGCGcCGUcGCgCGCCGg -3'
miRNA:   3'- -UGCC--------CGCG-GCGUGCuGCA-CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 8146 0.69 0.393066
Target:  5'- cCGGGCauggccGCgCGCACGGCGUGCgCGUa- -3'
miRNA:   3'- uGCCCG------CG-GCGUGCUGCACGaGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.