miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 8986 0.69 0.401177
Target:  5'- cGCGGGCGCCGCAUaGGCaUGCaUC-CUGu -3'
miRNA:   3'- -UGCCCGCGGCGUG-CUGcACG-AGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 10006 0.72 0.260159
Target:  5'- gGCcGGCGCCGCcguCGuCGUGCUCGaucCCGg -3'
miRNA:   3'- -UGcCCGCGGCGu--GCuGCACGAGC---GGC- -5'
25720 3' -63.1 NC_005337.1 + 10278 0.67 0.534223
Target:  5'- gGCGGcGCGUucaGCAUGGCGcGCgcaucggCGCCGu -3'
miRNA:   3'- -UGCC-CGCGg--CGUGCUGCaCGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 10416 0.66 0.552301
Target:  5'- uGCGGcuGCGCCcaggaggacgccuGCGCGGCGgUGCgcgCGUCGu -3'
miRNA:   3'- -UGCC--CGCGG-------------CGUGCUGC-ACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 10571 0.67 0.487754
Target:  5'- cACGGGCgugcccagccGCCGCACGGCGU-C-CGUgGa -3'
miRNA:   3'- -UGCCCG----------CGGCGUGCUGCAcGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 11153 1.07 0.000869
Target:  5'- gACGGGCGCCGCACGACGUGCUCGCCGu -3'
miRNA:   3'- -UGCCCGCGGCGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 11616 0.69 0.382684
Target:  5'- gGCGGGCcaccugcucgacgaGUCGCgucuuGCGGCgGUGCUCGCgGa -3'
miRNA:   3'- -UGCCCG--------------CGGCG-----UGCUG-CACGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 12046 0.68 0.443277
Target:  5'- gGCGuGCgGUCGUcCGGCGUGCgCGCCGa -3'
miRNA:   3'- -UGCcCG-CGGCGuGCUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 13171 0.66 0.562851
Target:  5'- cGCGGGCGCCGCGucCGccucGCG-GUUCacggggaugauGCCGu -3'
miRNA:   3'- -UGCCCGCGGCGU--GC----UGCaCGAG-----------CGGC- -5'
25720 3' -63.1 NC_005337.1 + 13303 0.69 0.417712
Target:  5'- gGCGGGC-UCGCAguggcccuUGGCGUcgauGCUCGCCa -3'
miRNA:   3'- -UGCCCGcGGCGU--------GCUGCA----CGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 13888 0.66 0.562851
Target:  5'- aACGaccacGUGCCGCACGAgcCGgcagGCgCGCCGg -3'
miRNA:   3'- -UGCc----CGCGGCGUGCU--GCa---CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 14408 0.74 0.187083
Target:  5'- -gGaGGUugugcuuGCCGCGCGACGUGC-CGCCGc -3'
miRNA:   3'- ugC-CCG-------CGGCGUGCUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 15478 0.74 0.216193
Target:  5'- gACGGcgcGCGCgGCACGACGgcgccGC-CGCCGg -3'
miRNA:   3'- -UGCC---CGCGgCGUGCUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 15847 0.68 0.469699
Target:  5'- cACGGcgaGCGCgGgCuuGGCG-GCUCGCCGg -3'
miRNA:   3'- -UGCC---CGCGgC-GugCUGCaCGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 16759 0.67 0.506128
Target:  5'- cACGGcGCGCCgGCugAUGuCGUGCaccgcgUCGCCGu -3'
miRNA:   3'- -UGCC-CGCGG-CG--UGCuGCACG------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 21702 0.67 0.487754
Target:  5'- cCGcaCGCCGUggugaccaAgGACGUGCUCGCCa -3'
miRNA:   3'- uGCccGCGGCG--------UgCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 23322 0.66 0.601609
Target:  5'- uAUGGGCGacaCGCA-GACGcGgUCGCCc -3'
miRNA:   3'- -UGCCCGCg--GCGUgCUGCaCgAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 23757 0.67 0.543713
Target:  5'- gUGGGCGCCGUguucACcACGcGCgagCGCCa -3'
miRNA:   3'- uGCCCGCGGCG----UGcUGCaCGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 23936 0.67 0.506128
Target:  5'- gGCaGGCG-CGCGCGACGcGCcCgGCCGg -3'
miRNA:   3'- -UGcCCGCgGCGUGCUGCaCGaG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 25046 0.68 0.473283
Target:  5'- cACGGGCccuccUCGCA-GACGUacgcaaagaaguaccGCUCGCCGa -3'
miRNA:   3'- -UGCCCGc----GGCGUgCUGCA---------------CGAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.