miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 25066 0.71 0.304379
Target:  5'- uGCGGGCggcguucgucaaGCUGCGCGACGccgaGCUcCGCCc -3'
miRNA:   3'- -UGCCCG------------CGGCGUGCUGCa---CGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 25274 0.68 0.434657
Target:  5'- aACGcGGCGCuggaguucgcgCGCACGGCGgGCggGCCGc -3'
miRNA:   3'- -UGC-CCGCG-----------GCGUGCUGCaCGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 25344 0.71 0.297724
Target:  5'- -aGGGCGCCacguCGCGGCGcGuCUCGCUGg -3'
miRNA:   3'- ugCCCGCGGc---GUGCUGCaC-GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 25416 0.69 0.417712
Target:  5'- uCGGGUuccGCuCGCACGACG-GCgugUCGCCc -3'
miRNA:   3'- uGCCCG---CG-GCGUGCUGCaCG---AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 26751 0.67 0.506128
Target:  5'- cCGGuCGCCGCGaaACGUGgUCGUCGu -3'
miRNA:   3'- uGCCcGCGGCGUgcUGCACgAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 27921 0.66 0.582165
Target:  5'- -gGGGCGCgCGauCugGACGgucauuucaucgUGCUgCGCCGg -3'
miRNA:   3'- ugCCCGCG-GC--GugCUGC------------ACGA-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 28484 0.7 0.377169
Target:  5'- cACGGauGCgGCCGCGCGGCGcGCggUCGCgCGg -3'
miRNA:   3'- -UGCC--CG-CGGCGUGCUGCaCG--AGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 28937 0.66 0.601609
Target:  5'- gACGGGgccuccCGCCGC-CGcACGUGCUgGgCa -3'
miRNA:   3'- -UGCCC------GCGGCGuGC-UGCACGAgCgGc -5'
25720 3' -63.1 NC_005337.1 + 29173 0.68 0.451993
Target:  5'- aACGcGGCGCCGCGCGACcgcagagGUUCaGUCc -3'
miRNA:   3'- -UGC-CCGCGGCGUGCUGca-----CGAG-CGGc -5'
25720 3' -63.1 NC_005337.1 + 29218 0.71 0.304379
Target:  5'- uGCGcaGCGCCGCGCGGCcggGCgUCGCCu -3'
miRNA:   3'- -UGCc-CGCGGCGUGCUGca-CG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 29648 0.67 0.515427
Target:  5'- cACGGGCuCCGagauGCG-CGUGCUC-CCGc -3'
miRNA:   3'- -UGCCCGcGGCg---UGCuGCACGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 29674 0.66 0.601609
Target:  5'- nGCGguGGCGCCGUA-----UGCUCGCCGc -3'
miRNA:   3'- -UGC--CCGCGGCGUgcugcACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 29773 0.66 0.582165
Target:  5'- cCGGGCGUCcggguGCGCGagcGCGUaGCagCGCCGc -3'
miRNA:   3'- uGCCCGCGG-----CGUGC---UGCA-CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 31500 0.68 0.451993
Target:  5'- cCGGGCGUggucaGCACGugGaUGCUCacggugcagguGCCGc -3'
miRNA:   3'- uGCCCGCGg----CGUGCugC-ACGAG-----------CGGC- -5'
25720 3' -63.1 NC_005337.1 + 31812 0.68 0.451993
Target:  5'- aGCGGGgacuuCUGCuuGGCGUGCUCgGCCGc -3'
miRNA:   3'- -UGCCCgc---GGCGugCUGCACGAG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 33538 0.66 0.601609
Target:  5'- cACGcGuCGUCGC-CGACGUGCaCGUCGa -3'
miRNA:   3'- -UGCcC-GCGGCGuGCUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 33616 0.66 0.553257
Target:  5'- aACGcGGCGUgGUucACGAUGUGCUUgGUCGu -3'
miRNA:   3'- -UGC-CCGCGgCG--UGCUGCACGAG-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 33693 0.66 0.601609
Target:  5'- gGCGGGCGCCaccuccucgaAgGugGUGg-CGCCGa -3'
miRNA:   3'- -UGCCCGCGGcg--------UgCugCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 34613 0.74 0.196226
Target:  5'- cACGGGCgcgcccaGCCGCGCGGCGaUGCcgCGCaCGu -3'
miRNA:   3'- -UGCCCG-------CGGCGUGCUGC-ACGa-GCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 34982 0.66 0.582165
Target:  5'- uGCGGaacgccGCGCCGCgccaggcagACGGcCGUGCcgaaccccgcgUCGCCGu -3'
miRNA:   3'- -UGCC------CGCGGCG---------UGCU-GCACG-----------AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.