miRNA display CGI


Results 61 - 80 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 35323 0.74 0.196693
Target:  5'- gAC-GGCGCCGCGgacccaGGCGUGCguggCGCCGa -3'
miRNA:   3'- -UGcCCGCGGCGUg-----CUGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 35563 0.72 0.263735
Target:  5'- -aGGGCGCCGCGCGAgCGgaugccuagcgagGCggaucccCGCCGg -3'
miRNA:   3'- ugCCCGCGGCGUGCU-GCa------------CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36006 0.69 0.384269
Target:  5'- aGCGGGUGaCCaccgucguggacgGCGacacggacugccCGACGUGCUCGUCGu -3'
miRNA:   3'- -UGCCCGC-GG-------------CGU------------GCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36204 0.66 0.569593
Target:  5'- cGCGGGUucgucguuuuuugcGCCGgcCGCGGCGcGCUC-CCGg -3'
miRNA:   3'- -UGCCCG--------------CGGC--GUGCUGCaCGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 36535 0.7 0.369384
Target:  5'- cGCGGGCGUCcC-CGGCGgcuggGCggCGCCGg -3'
miRNA:   3'- -UGCCCGCGGcGuGCUGCa----CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36780 0.66 0.581195
Target:  5'- cGCGGaccucguGCGacCCGCugGGCGUcagccGCgUCGCCGg -3'
miRNA:   3'- -UGCC-------CGC--GGCGugCUGCA-----CG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36890 0.69 0.393066
Target:  5'- uGCGGuucGCGCgGCGCGGCGUGgC-CGUCa -3'
miRNA:   3'- -UGCC---CGCGgCGUGCUGCAC-GaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 38255 0.67 0.487754
Target:  5'- gACGcGGCGCgCGUucgcgcucGCGGCGUucccGCUCGUCa -3'
miRNA:   3'- -UGC-CCGCG-GCG--------UGCUGCA----CGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 38358 0.66 0.553257
Target:  5'- cGCGaGGCG-CGCGCGGCc-GCcgUCGCCGc -3'
miRNA:   3'- -UGC-CCGCgGCGUGCUGcaCG--AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38484 0.71 0.304379
Target:  5'- cCGGGCGCgCGCGuCGcCGaGCUgGCCGa -3'
miRNA:   3'- uGCCCGCG-GCGU-GCuGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38651 0.66 0.591873
Target:  5'- aGCGGGC-CCGCGCccACGgacGC-CGCCa -3'
miRNA:   3'- -UGCCCGcGGCGUGc-UGCa--CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 38821 0.69 0.400361
Target:  5'- -gGGGCGCuacgccgCGCugGACGcGUaCGCCGg -3'
miRNA:   3'- ugCCCGCG-------GCGugCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 38896 0.66 0.562851
Target:  5'- cGCGcGCGUCGCGCGGcCGUcGCUguUGCCu -3'
miRNA:   3'- -UGCcCGCGGCGUGCU-GCA-CGA--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 38907 0.67 0.515427
Target:  5'- cUGGGCuucGUCgGCACGACG-GCUCcCCGg -3'
miRNA:   3'- uGCCCG---CGG-CGUGCUGCaCGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 39118 0.68 0.451993
Target:  5'- gUGGGCuGUCGCAuCGACGUGgaCaGCCu -3'
miRNA:   3'- uGCCCG-CGGCGU-GCUGCACgaG-CGGc -5'
25720 3' -63.1 NC_005337.1 + 39223 0.66 0.591873
Target:  5'- cCGGGCGUgcgcgacaaCGCGCaGGCGUuccuGCcCGCCGu -3'
miRNA:   3'- uGCCCGCG---------GCGUG-CUGCA----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39428 0.66 0.562851
Target:  5'- cGCGGGCGcCCGCuCGGgcCGcGCUCGgUGc -3'
miRNA:   3'- -UGCCCGC-GGCGuGCU--GCaCGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 39452 0.66 0.595765
Target:  5'- cACGGuaagauccccucaGUgGCG-GACGUGCUCGCCGa -3'
miRNA:   3'- -UGCCcg-----------CGgCGUgCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39473 0.69 0.385063
Target:  5'- gACGccuccGUGCCGCGCGACGcGCgcgCGCUGc -3'
miRNA:   3'- -UGCc----CGCGGCGUGCUGCaCGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39559 0.68 0.434657
Target:  5'- gGCGGGCGCUcggGUACucguccuCGUGgaCGCCGa -3'
miRNA:   3'- -UGCCCGCGG---CGUGcu-----GCACgaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.