miRNA display CGI


Results 81 - 100 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 39946 0.7 0.369384
Target:  5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 40038 0.66 0.553257
Target:  5'- aGCGGGCGUCGuCGCG--GUGC--GCCGa -3'
miRNA:   3'- -UGCCCGCGGC-GUGCugCACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 40826 0.68 0.442411
Target:  5'- gGCGGGCgucuuccgcaugaGCCGCACGGgacacGCgUCGCCGu -3'
miRNA:   3'- -UGCCCG-------------CGGCGUGCUgca--CG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 42551 0.67 0.487754
Target:  5'- uGCGGGCGCUgGUGCGGC-UGCg-GCUGg -3'
miRNA:   3'- -UGCCCGCGG-CGUGCUGcACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 42760 0.68 0.443277
Target:  5'- uGCGGGUcCCGCGCGuucgUGUGCUCgGgCGg -3'
miRNA:   3'- -UGCCCGcGGCGUGCu---GCACGAG-CgGC- -5'
25720 3' -63.1 NC_005337.1 + 42807 0.66 0.572488
Target:  5'- ---cGCGaaGCACGGgauCGUGCUCGCCc -3'
miRNA:   3'- ugccCGCggCGUGCU---GCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 43332 0.67 0.534223
Target:  5'- uCGGG-GCuCGC-CGACGcGCUgGCCGc -3'
miRNA:   3'- uGCCCgCG-GCGuGCUGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 43692 0.66 0.559968
Target:  5'- gGCGGaCGCCG-ACGACGgaccgGCcgacgacggcgacuUCGCCGa -3'
miRNA:   3'- -UGCCcGCGGCgUGCUGCa----CG--------------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 43904 0.66 0.562851
Target:  5'- cGCGcGGCcggaagagGCCGCGCGuaACGgccGCUgGCCGc -3'
miRNA:   3'- -UGC-CCG--------CGGCGUGC--UGCa--CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 44573 0.67 0.487754
Target:  5'- cGCGGcCGCCGCGauCGGCGU-CUcCGCCa -3'
miRNA:   3'- -UGCCcGCGGCGU--GCUGCAcGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 45030 0.66 0.562851
Target:  5'- aGCGuGGacuGCCGCACGAUGcuccgcaagcUGggCGCCGg -3'
miRNA:   3'- -UGC-CCg--CGGCGUGCUGC----------ACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 45201 0.67 0.507055
Target:  5'- -gGGGCGCUGUcgcucaugagucucGCGGCGgacgcggccuucgaGCUCGUCGg -3'
miRNA:   3'- ugCCCGCGGCG--------------UGCUGCa-------------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 46025 0.67 0.506128
Target:  5'- cCGGcGCGCCggcacGCACGACGUcUUCGCa- -3'
miRNA:   3'- uGCC-CGCGG-----CGUGCUGCAcGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 46340 0.8 0.08275
Target:  5'- cCGGGCuGCCGC-CGGCGUGCacgaagCGCCGg -3'
miRNA:   3'- uGCCCG-CGGCGuGCUGCACGa-----GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 47489 0.69 0.385063
Target:  5'- cGCGGGaccuGCCGC-CGccCGUGCggaCGCCGg -3'
miRNA:   3'- -UGCCCg---CGGCGuGCu-GCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 47602 0.68 0.469699
Target:  5'- gUGGGCgacGCCGCGCGcGCG-GCcgCGCUGa -3'
miRNA:   3'- uGCCCG---CGGCGUGC-UGCaCGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 47794 0.67 0.515427
Target:  5'- -gGGGUGCUGCGC-ACGUGCgaccccucgCGCUu -3'
miRNA:   3'- ugCCCGCGGCGUGcUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 48919 0.66 0.573454
Target:  5'- cACGGGCaCCGCguccggcaacugcgGCgugaaggcggugaugGACGUGCUgGCCa -3'
miRNA:   3'- -UGCCCGcGGCG--------------UG---------------CUGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 49447 0.66 0.581195
Target:  5'- cGCGGcCGCgUGCGCGAUGcuggcguUGCUgGCCGc -3'
miRNA:   3'- -UGCCcGCG-GCGUGCUGC-------ACGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 49734 0.67 0.506128
Target:  5'- aGCGGGaCGCCGgAC-ACG-GUgCGCCGg -3'
miRNA:   3'- -UGCCC-GCGGCgUGcUGCaCGaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.