miRNA display CGI


Results 101 - 120 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 50383 0.75 0.166256
Target:  5'- cACGGGCGCCugGCGCGGgG-GCgCGCCGc -3'
miRNA:   3'- -UGCCCGCGG--CGUGCUgCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 50723 0.67 0.524793
Target:  5'- cGCGGGacuGCCGUcccGCGACGagacgaUGCUCGUg- -3'
miRNA:   3'- -UGCCCg--CGGCG---UGCUGC------ACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 50985 0.7 0.364767
Target:  5'- -gGGGCGCCGCGCGuucguCGUcggcccggcccucgaGC-CGCCa -3'
miRNA:   3'- ugCCCGCGGCGUGCu----GCA---------------CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 52366 0.66 0.582165
Target:  5'- gACGGG-GCCGCugACGGC-UGCgggGCCGu -3'
miRNA:   3'- -UGCCCgCGGCG--UGCUGcACGag-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 52647 0.67 0.487754
Target:  5'- gACGGGCGCaaGCACGAC--GCcUGCCu -3'
miRNA:   3'- -UGCCCGCGg-CGUGCUGcaCGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 53660 0.79 0.091596
Target:  5'- cACGcGCGCUuCGCGGCGUGCUCGCUGg -3'
miRNA:   3'- -UGCcCGCGGcGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 53846 0.68 0.434657
Target:  5'- gGCuGGCGCUGCGCGccGCGgacgGCUCcuGCUGg -3'
miRNA:   3'- -UGcCCGCGGCGUGC--UGCa---CGAG--CGGC- -5'
25720 3' -63.1 NC_005337.1 + 54108 0.77 0.133365
Target:  5'- uACGGGCGCUgcuacguggaGCGCGACG-GCcgCGCCGc -3'
miRNA:   3'- -UGCCCGCGG----------CGUGCUGCaCGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 55993 0.69 0.417712
Target:  5'- uGCGGGCGaCCuCGCuGGCGggGCucaUCGCCGa -3'
miRNA:   3'- -UGCCCGC-GGcGUG-CUGCa-CG---AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 57104 0.69 0.393066
Target:  5'- cGCGGGUGgCGC-CGGCaguaccccGUGgUCGCCGc -3'
miRNA:   3'- -UGCCCGCgGCGuGCUG--------CACgAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 57206 0.7 0.36171
Target:  5'- uACGGGUGCCGCGCccgcgaaaacucGGCG-GCUaacgagGCCGu -3'
miRNA:   3'- -UGCCCGCGGCGUG------------CUGCaCGAg-----CGGC- -5'
25720 3' -63.1 NC_005337.1 + 57269 0.69 0.390654
Target:  5'- cACGGG-GCCGCGCGGgGccggcgcgcgcggcUGCggCGCCGc -3'
miRNA:   3'- -UGCCCgCGGCGUGCUgC--------------ACGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 57804 0.67 0.487754
Target:  5'- cGCGGGCaGCCGCAUcuGCGUGgUCaUCGa -3'
miRNA:   3'- -UGCCCG-CGGCGUGc-UGCACgAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 58017 0.79 0.089304
Target:  5'- cCGGGCgugcucggccagGCCGCgcucuucgacgGCGGCGUGCUCGCCa -3'
miRNA:   3'- uGCCCG------------CGGCG-----------UGCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 59721 0.69 0.401177
Target:  5'- cGCGGccagcaucacGCGCCGCGCGGCGgaGCgCGUCu -3'
miRNA:   3'- -UGCC----------CGCGGCGUGCUGCa-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 60196 0.66 0.601609
Target:  5'- uGCGGGUGCgGCGCGGgGggggacgGCUugggCGCgGg -3'
miRNA:   3'- -UGCCCGCGgCGUGCUgCa------CGA----GCGgC- -5'
25720 3' -63.1 NC_005337.1 + 62511 0.66 0.582165
Target:  5'- --uGGUGUCGUccGCGAUGcGCUCGCCc -3'
miRNA:   3'- ugcCCGCGGCG--UGCUGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 62962 0.69 0.414372
Target:  5'- cGCGGGuCGCCGCcgACGagaaguGCGUGCggaagcgcaccagCGCCa -3'
miRNA:   3'- -UGCCC-GCGGCG--UGC------UGCACGa------------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 63111 0.75 0.17033
Target:  5'- cACGGGCGCCcCACGAUGcaggGCUCGgUGa -3'
miRNA:   3'- -UGCCCGCGGcGUGCUGCa---CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 63150 0.68 0.460801
Target:  5'- uGCcGGUGCCGCcgcccgAgGACGUGCUgagccCGCCGc -3'
miRNA:   3'- -UGcCCGCGGCG------UgCUGCACGA-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.