miRNA display CGI


Results 1 - 20 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 133716 0.7 0.332137
Target:  5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3'
miRNA:   3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133716 0.7 0.332137
Target:  5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3'
miRNA:   3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133537 0.71 0.31803
Target:  5'- cGCGGGCGCCGCGCu-----CUCGCCc -3'
miRNA:   3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133537 0.71 0.31803
Target:  5'- cGCGGGCGCCGCGCu-----CUCGCCc -3'
miRNA:   3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 133455 0.68 0.478685
Target:  5'- cCGGGC-CCGCGCGcGCGgacgGCUcCGCgGa -3'
miRNA:   3'- uGCCCGcGGCGUGC-UGCa---CGA-GCGgC- -5'
25720 3' -63.1 NC_005337.1 + 133455 0.68 0.478685
Target:  5'- cCGGGC-CCGCGCGcGCGgacgGCUcCGCgGa -3'
miRNA:   3'- uGCCCGcGGCGUGC-UGCa---CGA-GCGgC- -5'
25720 3' -63.1 NC_005337.1 + 133115 0.68 0.469699
Target:  5'- aGCGGGCcgcuCCGC-CGGCGcGCUCcCCGc -3'
miRNA:   3'- -UGCCCGc---GGCGuGCUGCaCGAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 132602 0.69 0.415206
Target:  5'- cCGGGCaCCGCaACGACGcgGCggcggccaagcucgUCGCCGc -3'
miRNA:   3'- uGCCCGcGGCG-UGCUGCa-CG--------------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 132284 0.66 0.553257
Target:  5'- uGCGGuCGuCCGaCGCGACGcuggaGCUCGuCCGg -3'
miRNA:   3'- -UGCCcGC-GGC-GUGCUGCa----CGAGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 132075 0.68 0.477782
Target:  5'- cCGGGCcgcgcccgcguccGCCGCcuGCGcCGUGCgcgucggCGCCGu -3'
miRNA:   3'- uGCCCG-------------CGGCG--UGCuGCACGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 131895 0.7 0.346698
Target:  5'- gGCGGGCG-CGCACGugGacGCggUCGaCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCa-CG--AGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 131324 0.66 0.553257
Target:  5'- gGCGGagaccGCGCUcauGCGCGcCGUGCgCGUCGg -3'
miRNA:   3'- -UGCC-----CGCGG---CGUGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 131010 0.72 0.284116
Target:  5'- cACGuGGcCGCCGCGCaccgcaacgacaaGGCGUGCgcgCGCCu -3'
miRNA:   3'- -UGC-CC-GCGGCGUG-------------CUGCACGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 130785 0.71 0.311147
Target:  5'- cUGGGCGCCGCcgguGCGGC-UGCUgCGCUu -3'
miRNA:   3'- uGCCCGCGGCG----UGCUGcACGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 130693 0.68 0.440681
Target:  5'- -gGGGCGCUGCucaaguccccguccGCGuGCGUggaGCUCGUCGa -3'
miRNA:   3'- ugCCCGCGGCG--------------UGC-UGCA---CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 128786 0.68 0.478685
Target:  5'- cACGGGUG-CGCGCGAUcaugggcggGUGCggcugCGCCc -3'
miRNA:   3'- -UGCCCGCgGCGUGCUG---------CACGa----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 128493 0.72 0.254287
Target:  5'- cGCGGGCGUgCGuCGCGuACGUGgUCGCgCGg -3'
miRNA:   3'- -UGCCCGCG-GC-GUGC-UGCACgAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 128322 0.7 0.339361
Target:  5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3'
miRNA:   3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.