miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 128020 0.66 0.572488
Target:  5'- cGCcGGCGCCaGCgucaGCGACGcUGaCUCGCgCGg -3'
miRNA:   3'- -UGcCCGCGG-CG----UGCUGC-AC-GAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 128003 0.68 0.460801
Target:  5'- cACGa-CGCUGCugGACGUGCUcCGCg- -3'
miRNA:   3'- -UGCccGCGGCGugCUGCACGA-GCGgc -5'
25720 3' -63.1 NC_005337.1 + 127961 0.7 0.369384
Target:  5'- gGCGGagauccGCGCCauGCGCGAgGUGCgcugcaaCGCCGa -3'
miRNA:   3'- -UGCC------CGCGG--CGUGCUgCACGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127888 0.72 0.278437
Target:  5'- cGCGcGGCGCCGgcgaGCG-CGUGCggGCCGa -3'
miRNA:   3'- -UGC-CCGCGGCg---UGCuGCACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127583 0.68 0.460801
Target:  5'- gGCGGGCGCaGC-CGugGacgUCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuGCugCacgAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127405 0.71 0.322916
Target:  5'- gACGGGCGCaCGCugcugcaccaccugGCGAcCGUGC-CGCgGg -3'
miRNA:   3'- -UGCCCGCG-GCG--------------UGCU-GCACGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 127269 0.67 0.506128
Target:  5'- gGCGGGCgcggacguccgcGCCauggacaaGCACGGCGUcaccccGCUgGCCGu -3'
miRNA:   3'- -UGCCCG------------CGG--------CGUGCUGCA------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 127044 0.67 0.533277
Target:  5'- gGCGGGCGCggaggugCGCACcgaaGGCGgGUUCGUCu -3'
miRNA:   3'- -UGCCCGCG-------GCGUG----CUGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 126939 0.77 0.136701
Target:  5'- gGCGGGCGCggacgugaacgCGCGCGACGUGUgcggguacaCGCCa -3'
miRNA:   3'- -UGCCCGCG-----------GCGUGCUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 123869 0.74 0.192064
Target:  5'- gGCGGGCGCgGCGCGuACG-GCcUCGUCu -3'
miRNA:   3'- -UGCCCGCGgCGUGC-UGCaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 123695 0.7 0.36171
Target:  5'- cACGGaCGCCGUGCGGCGgcuggGCaCGCCc -3'
miRNA:   3'- -UGCCcGCGGCGUGCUGCa----CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 123668 0.7 0.377169
Target:  5'- cCuGGCGCCGCcgcucccccGCGGCGggaccggGCUCGUCGc -3'
miRNA:   3'- uGcCCGCGGCG---------UGCUGCa------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 122405 0.73 0.231885
Target:  5'- uGCGcGGCGgCGCGCGGCGccUGUccgCGCCGa -3'
miRNA:   3'- -UGC-CCGCgGCGUGCUGC--ACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 122356 0.67 0.515427
Target:  5'- cCGGGUGCCGCaucggacgccacGCGcAUGUGCgugCGCg- -3'
miRNA:   3'- uGCCCGCGGCG------------UGC-UGCACGa--GCGgc -5'
25720 3' -63.1 NC_005337.1 + 122208 0.7 0.346698
Target:  5'- cGCGGGCGCggaCGUGuCGGCGcGCaCGCCGg -3'
miRNA:   3'- -UGCCCGCG---GCGU-GCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 121690 0.67 0.534223
Target:  5'- cGCGGGCGCCaacgugaacgcGCGCGGgGagGCggacaagaCGCCGc -3'
miRNA:   3'- -UGCCCGCGG-----------CGUGCUgCa-CGa-------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 118927 0.66 0.553257
Target:  5'- cUGGaaGCGUCGCGCGggcgcaGCGUGCgUCGCgCGa -3'
miRNA:   3'- uGCC--CGCGGCGUGC------UGCACG-AGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 118244 0.7 0.332137
Target:  5'- gGCaGGCGCCGCAgcGCGUGUaccUGCCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgcUGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 118120 0.67 0.487754
Target:  5'- aACGcGGCGCgagCGCuacuuCGACGUGUgcggUGCCGc -3'
miRNA:   3'- -UGC-CCGCG---GCGu----GCUGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 117158 0.68 0.469699
Target:  5'- cGCGGGCG-CGCAUGGagacgcuccuCGcGUUCGCCa -3'
miRNA:   3'- -UGCCCGCgGCGUGCU----------GCaCGAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.