miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 117030 0.69 0.385063
Target:  5'- cCGGGCGCUGC-CGACGcUGCagGUgGa -3'
miRNA:   3'- uGCCCGCGGCGuGCUGC-ACGagCGgC- -5'
25720 3' -63.1 NC_005337.1 + 115553 0.66 0.601609
Target:  5'- -aGaGGCGCCaGCGCGcCGcagcucCUCGCCGg -3'
miRNA:   3'- ugC-CCGCGG-CGUGCuGCac----GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 115215 0.68 0.451993
Target:  5'- uGCGGGCGCUGCugaaGAUGgGCgcggaccccuUCGCCu -3'
miRNA:   3'- -UGCCCGCGGCGug--CUGCaCG----------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 115003 0.71 0.31803
Target:  5'- cAC-GGCGCuCGCcaaaggcuaccACGACGUGCUgGCCa -3'
miRNA:   3'- -UGcCCGCG-GCG-----------UGCUGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 113602 0.68 0.443277
Target:  5'- gACGGGUGcCCGCcccucugguccGCGcCGUGCgagGCCGa -3'
miRNA:   3'- -UGCCCGC-GGCG-----------UGCuGCACGag-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 112395 0.66 0.572488
Target:  5'- -aGGaGCGCCGCGCaGGcCGUGCgguagGCCu -3'
miRNA:   3'- ugCC-CGCGGCGUG-CU-GCACGag---CGGc -5'
25720 3' -63.1 NC_005337.1 + 111561 0.66 0.553257
Target:  5'- gGC-GGUGCCGUagACGAgGUGCgacaugaacgCGCCGu -3'
miRNA:   3'- -UGcCCGCGGCG--UGCUgCACGa---------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 111129 0.69 0.417712
Target:  5'- cACGGGCGUgaagaGCAgGAUGUGCUUGaagCGg -3'
miRNA:   3'- -UGCCCGCGg----CGUgCUGCACGAGCg--GC- -5'
25720 3' -63.1 NC_005337.1 + 110947 0.67 0.524793
Target:  5'- gUGGGCGaCCGCGuCuGCGUG-UCGCCc -3'
miRNA:   3'- uGCCCGC-GGCGU-GcUGCACgAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 110507 0.73 0.237325
Target:  5'- gACGuGGCGCuCGCGCGugGUGaacacggCGCCc -3'
miRNA:   3'- -UGC-CCGCG-GCGUGCugCACga-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 110319 0.67 0.533277
Target:  5'- -gGGcGCGCCGUucggcccggccggGCGGCGUcGCgcgCGCCu -3'
miRNA:   3'- ugCC-CGCGGCG-------------UGCUGCA-CGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 109391 0.66 0.552301
Target:  5'- cGCGGGUcuggcguGCCGUccacagacACGGCGUGCgCGaCCa -3'
miRNA:   3'- -UGCCCG-------CGGCG--------UGCUGCACGaGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 109175 0.68 0.451993
Target:  5'- cGCGccGCGCCGCGCgGGCGgaGCUCGgCGu -3'
miRNA:   3'- -UGCc-CGCGGCGUG-CUGCa-CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 108651 0.67 0.533277
Target:  5'- gGCGGGCGaCCGCGCGGacgaaacCGUGUccuucCGCa- -3'
miRNA:   3'- -UGCCCGC-GGCGUGCU-------GCACGa----GCGgc -5'
25720 3' -63.1 NC_005337.1 + 108191 0.72 0.284753
Target:  5'- gGCGGcgcuuccccGCGCCGCGCuacauugcgguGGCGUGCgagccgcgcUCGCCGg -3'
miRNA:   3'- -UGCC---------CGCGGCGUG-----------CUGCACG---------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 106031 0.72 0.272233
Target:  5'- cGCGuGGUGCCGCGCGACG-GCguuUCGgUGa -3'
miRNA:   3'- -UGC-CCGCGGCGUGCUGCaCG---AGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 105211 0.67 0.506128
Target:  5'- cUGGGgGCCGCugaGCuGCGcGCUCGCgGg -3'
miRNA:   3'- uGCCCgCGGCG---UGcUGCaCGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 105162 0.78 0.114881
Target:  5'- uGCuGGCGCUGCACGGCGUGgUCGaCCc -3'
miRNA:   3'- -UGcCCGCGGCGUGCUGCACgAGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 105094 0.7 0.349664
Target:  5'- cACGGGCGCCgccgcgucuccggaGCugGACGacgcgGCgcuccggacggccgUCGCCGa -3'
miRNA:   3'- -UGCCCGCGG--------------CGugCUGCa----CG--------------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 105048 0.7 0.354148
Target:  5'- gGCaGGCgacgcccgGCCGCGCGGCGcUGCgcagCGCCu -3'
miRNA:   3'- -UGcCCG--------CGGCGUGCUGC-ACGa---GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.