miRNA display CGI


Results 61 - 80 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 104308 0.67 0.496903
Target:  5'- -aGGGCGCgGCgGCGcucuGCGUGCguccCGUCGg -3'
miRNA:   3'- ugCCCGCGgCG-UGC----UGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 103332 0.69 0.412708
Target:  5'- cCGGGCGgcucacccgcCCGCugcugguggucgagaACGGCGUGCUCGUg- -3'
miRNA:   3'- uGCCCGC----------GGCG---------------UGCUGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 101944 0.67 0.524793
Target:  5'- gACGagcuGCGcCCGCACGugGccugccGCUCGCUGu -3'
miRNA:   3'- -UGCc---CGC-GGCGUGCugCa-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 101352 0.67 0.534223
Target:  5'- cACGGGCGCCaucgaGCAC-ACGgUGUuccccUCGCUGa -3'
miRNA:   3'- -UGCCCGCGG-----CGUGcUGC-ACG-----AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 101229 0.76 0.150822
Target:  5'- cGCGgaGGCGuCCGCGCG-CGUGCUCGCg- -3'
miRNA:   3'- -UGC--CCGC-GGCGUGCuGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 100707 0.76 0.142547
Target:  5'- gACGcGGCGCCGCGCucucgcaguucuucGACGUGCaCGUCGg -3'
miRNA:   3'- -UGC-CCGCGGCGUG--------------CUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100550 0.67 0.543713
Target:  5'- -gGGGUGCUGCGCGACc-GCauccucggCGCCa -3'
miRNA:   3'- ugCCCGCGGCGUGCUGcaCGa-------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 100403 0.67 0.496903
Target:  5'- cGCGGGCGCgCGCuACGAgauCGacGCgCGCCa -3'
miRNA:   3'- -UGCCCGCG-GCG-UGCU---GCa-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 100258 0.69 0.393066
Target:  5'- -aGGGCGCCGaGCGG-GUGCUccuccugaCGCCGc -3'
miRNA:   3'- ugCCCGCGGCgUGCUgCACGA--------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100221 0.66 0.591873
Target:  5'- gGCcGGCGCCGCguGCG-CGUGaUCGCgGu -3'
miRNA:   3'- -UGcCCGCGGCG--UGCuGCACgAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 99654 0.69 0.426135
Target:  5'- cGCGGcauCGCCGCGCGGCuggGCgCGCCc -3'
miRNA:   3'- -UGCCc--GCGGCGUGCUGca-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 99539 0.76 0.158369
Target:  5'- cCGGuGCGCCGC-CGAC-UGCUCGCgCGa -3'
miRNA:   3'- uGCC-CGCGGCGuGCUGcACGAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 99416 0.68 0.469699
Target:  5'- cGCGGGCGgCGggUG-CGUGCUgaGCCGc -3'
miRNA:   3'- -UGCCCGCgGCguGCuGCACGAg-CGGC- -5'
25720 3' -63.1 NC_005337.1 + 99293 0.71 0.291182
Target:  5'- cCuGGCGCgGCGCGGCGUuccGCagCGCCGg -3'
miRNA:   3'- uGcCCGCGgCGUGCUGCA---CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 99165 0.7 0.377169
Target:  5'- gGCGuccGCGCCGCGCgGACGaUGCgCGUCGa -3'
miRNA:   3'- -UGCc--CGCGGCGUG-CUGC-ACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 98527 0.66 0.591873
Target:  5'- cCGGGgGgagcCCGCccgACGgccGCGUGCUUGCCa -3'
miRNA:   3'- uGCCCgC----GGCG---UGC---UGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 98364 0.68 0.469699
Target:  5'- gACGGGCggaaGCUGgACGcCGUGCUgGUCa -3'
miRNA:   3'- -UGCCCG----CGGCgUGCuGCACGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 97683 0.78 0.114881
Target:  5'- cGCGGGCG-UGCACGugGUGgacgucuucuuCUCGCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCAC-----------GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 97169 0.66 0.601609
Target:  5'- gGCGccucGGCGCUGCugcgcucCGGCGaGCUCGaCCGc -3'
miRNA:   3'- -UGC----CCGCGGCGu------GCUGCaCGAGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 97104 0.68 0.478685
Target:  5'- uGCuGGUGCCGCA-GugGcGCUCGgCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgCugCaCGAGCgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.