miRNA display CGI


Results 81 - 100 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 96100 0.66 0.553257
Target:  5'- cGCGGGCGCgGCGgagGACaUGCg-GCCGc -3'
miRNA:   3'- -UGCCCGCGgCGUg--CUGcACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 95579 0.67 0.543713
Target:  5'- gACGGGcCGCCGCcgacaccagGCGGCGaacagcgucUGCUgcaCGUCGg -3'
miRNA:   3'- -UGCCC-GCGGCG---------UGCUGC---------ACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 95500 0.67 0.534223
Target:  5'- uCGGGCGCgucgggcuccacCGCGCacCG-GCUCGCCa -3'
miRNA:   3'- uGCCCGCG------------GCGUGcuGCaCGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 95320 0.67 0.496903
Target:  5'- uCGGGCGCCGaucgguGCG-CGUcGCaguagCGCCGg -3'
miRNA:   3'- uGCCCGCGGCg-----UGCuGCA-CGa----GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 95305 0.66 0.582165
Target:  5'- -aGGcGCGCgGCGCGcUGUugcGCUCGUCGu -3'
miRNA:   3'- ugCC-CGCGgCGUGCuGCA---CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 94857 0.72 0.266141
Target:  5'- aGCGGGCGCC-CGCG-CGUGUcgaacagCGCCu -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCACGa------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 94741 0.66 0.601609
Target:  5'- -gGGGCGCCGgcagcCACGACcgcgaGCUgGCCc -3'
miRNA:   3'- ugCCCGCGGC-----GUGCUGca---CGAgCGGc -5'
25720 3' -63.1 NC_005337.1 + 94149 0.7 0.377169
Target:  5'- -gGGGCGgCGCcuccccACGACGgagaaccGCUUGCCGa -3'
miRNA:   3'- ugCCCGCgGCG------UGCUGCa------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 93041 0.7 0.346698
Target:  5'- cAUGGGCGaggacCUGUACGugGUGCUCuCCu -3'
miRNA:   3'- -UGCCCGC-----GGCGUGCugCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 92659 0.72 0.278437
Target:  5'- aACGaGGUGCUGCAcugcuuCGACGUGCUCaCCu -3'
miRNA:   3'- -UGC-CCGCGGCGU------GCUGCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 92655 0.72 0.272233
Target:  5'- cCGGGCGUCGCACcACG-GCcuccuUCGCCa -3'
miRNA:   3'- uGCCCGCGGCGUGcUGCaCG-----AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 91904 0.82 0.054886
Target:  5'- cCGGGuCGCCGguCACGACGUGCgUCGCCGc -3'
miRNA:   3'- uGCCC-GCGGC--GUGCUGCACG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 91659 0.68 0.478685
Target:  5'- cCGcGGUGCCGCACauGGCGggcGCUagcaGCCGc -3'
miRNA:   3'- uGC-CCGCGGCGUG--CUGCa--CGAg---CGGC- -5'
25720 3' -63.1 NC_005337.1 + 91465 0.66 0.562851
Target:  5'- cUGGGCGa-GCACGAuccCGUGCuUCGCgGc -3'
miRNA:   3'- uGCCCGCggCGUGCU---GCACG-AGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 91193 0.76 0.147172
Target:  5'- cCGGGCGCCGCGaugcgGACGgGCgCGCCGc -3'
miRNA:   3'- uGCCCGCGGCGUg----CUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 88509 0.69 0.398732
Target:  5'- cAUGGacaGCGCCGCGCGGuacgaacgcggggcCGUGCUagacggCGCCGu -3'
miRNA:   3'- -UGCC---CGCGGCGUGCU--------------GCACGA------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 88272 0.67 0.487754
Target:  5'- gGCGGGCGCCGCG-GAgGacaUgGCCGa -3'
miRNA:   3'- -UGCCCGCGGCGUgCUgCacgAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 88233 0.73 0.237325
Target:  5'- gGCGGGCuGCUGCgaagACGuCGUGCgUGCCGg -3'
miRNA:   3'- -UGCCCG-CGGCG----UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 87917 0.67 0.515427
Target:  5'- cGCGccuGCGCCgGCGCuuCGUGCaCGCCGg -3'
miRNA:   3'- -UGCc--CGCGG-CGUGcuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 87822 0.69 0.382684
Target:  5'- cGCGGcGCGCCGCGCGcagaucgcgaACaucauccacgaccgGUGCaUCGCCa -3'
miRNA:   3'- -UGCC-CGCGGCGUGC----------UG--------------CACG-AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.