miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 29218 0.71 0.304379
Target:  5'- uGCGcaGCGCCGCGCGGCcggGCgUCGCCu -3'
miRNA:   3'- -UGCc-CGCGGCGUGCUGca-CG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 69871 0.72 0.254287
Target:  5'- aGCGGcCGCUGCugGACcuGUGC-CGCCGc -3'
miRNA:   3'- -UGCCcGCGGCGugCUG--CACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 128493 0.72 0.254287
Target:  5'- cGCGGGCGUgCGuCGCGuACGUGgUCGCgCGg -3'
miRNA:   3'- -UGCCCGCG-GC-GUGC-UGCACgAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 35563 0.72 0.263735
Target:  5'- -aGGGCGCCGCGCGAgCGgaugccuagcgagGCggaucccCGCCGg -3'
miRNA:   3'- ugCCCGCGGCGUGCU-GCa------------CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 94857 0.72 0.266141
Target:  5'- aGCGGGCGCC-CGCG-CGUGUcgaacagCGCCu -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCACGa------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 92655 0.72 0.272233
Target:  5'- cCGGGCGUCGCACcACG-GCcuccuUCGCCa -3'
miRNA:   3'- uGCCCGCGGCGUGcUGCaCG-----AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 99293 0.71 0.291182
Target:  5'- cCuGGCGCgGCGCGGCGUuccGCagCGCCGg -3'
miRNA:   3'- uGcCCGCGgCGUGCUGCA---CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 25344 0.71 0.297724
Target:  5'- -aGGGCGCCacguCGCGGCGcGuCUCGCUGg -3'
miRNA:   3'- ugCCCGCGGc---GUGCUGCaC-GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 3010 0.71 0.304379
Target:  5'- gACGGGCuCCGgcaGCG-CGUGCgCGCCGa -3'
miRNA:   3'- -UGCCCGcGGCg--UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 122405 0.73 0.231885
Target:  5'- uGCGcGGCGgCGCGCGGCGccUGUccgCGCCGa -3'
miRNA:   3'- -UGC-CCGCgGCGUGCUGC--ACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 74245 0.74 0.216193
Target:  5'- gGCGGGuCGCCGCGCGG-GUcuccGCgCGCCGa -3'
miRNA:   3'- -UGCCC-GCGGCGUGCUgCA----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 15478 0.74 0.216193
Target:  5'- gACGGcgcGCGCgGCACGACGgcgccGC-CGCCGg -3'
miRNA:   3'- -UGCC---CGCGgCGUGCUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100707 0.76 0.142547
Target:  5'- gACGcGGCGCCGCGCucucgcaguucuucGACGUGCaCGUCGg -3'
miRNA:   3'- -UGC-CCGCGGCGUG--------------CUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 91193 0.76 0.147172
Target:  5'- cCGGGCGCCGCGaugcgGACGgGCgCGCCGc -3'
miRNA:   3'- uGCCCGCGGCGUg----CUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 101229 0.76 0.150822
Target:  5'- cGCGgaGGCGuCCGCGCG-CGUGCUCGCg- -3'
miRNA:   3'- -UGC--CCGC-GGCGUGCuGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 99539 0.76 0.158369
Target:  5'- cCGGuGCGCCGC-CGAC-UGCUCGCgCGa -3'
miRNA:   3'- uGCC-CGCGGCGuGCUGcACGAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 66770 0.75 0.162269
Target:  5'- cGCGcGG-GCCGCugGGCGUGCUCuCCa -3'
miRNA:   3'- -UGC-CCgCGGCGugCUGCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 50383 0.75 0.166256
Target:  5'- cACGGGCGCCugGCGCGGgG-GCgCGCCGc -3'
miRNA:   3'- -UGCCCGCGG--CGUGCUgCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 6025 0.75 0.17033
Target:  5'- gGCGGGCGCCaGCAgGGcCGUGCgcaGCCc -3'
miRNA:   3'- -UGCCCGCGG-CGUgCU-GCACGag-CGGc -5'
25720 3' -63.1 NC_005337.1 + 123869 0.74 0.192064
Target:  5'- gGCGGGCGCgGCGCGuACG-GCcUCGUCu -3'
miRNA:   3'- -UGCCCGCGgCGUGC-UGCaCG-AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.