miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 66770 0.75 0.162269
Target:  5'- cGCGcGG-GCCGCugGGCGUGCUCuCCa -3'
miRNA:   3'- -UGC-CCgCGGCGugCUGCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 99539 0.76 0.158369
Target:  5'- cCGGuGCGCCGC-CGAC-UGCUCGCgCGa -3'
miRNA:   3'- uGCC-CGCGGCGuGCUGcACGAGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 101229 0.76 0.150822
Target:  5'- cGCGgaGGCGuCCGCGCG-CGUGCUCGCg- -3'
miRNA:   3'- -UGC--CCGC-GGCGUGCuGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 91193 0.76 0.147172
Target:  5'- cCGGGCGCCGCGaugcgGACGgGCgCGCCGc -3'
miRNA:   3'- uGCCCGCGGCGUg----CUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 100707 0.76 0.142547
Target:  5'- gACGcGGCGCCGCGCucucgcaguucuucGACGUGCaCGUCGg -3'
miRNA:   3'- -UGC-CCGCGGCGUG--------------CUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 35563 0.72 0.263735
Target:  5'- -aGGGCGCCGCGCGAgCGgaugccuagcgagGCggaucccCGCCGg -3'
miRNA:   3'- ugCCCGCGGCGUGCU-GCa------------CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 94857 0.72 0.266141
Target:  5'- aGCGGGCGCC-CGCG-CGUGUcgaacagCGCCu -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCACGa------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 7477 0.7 0.345959
Target:  5'- -aGGGCG-CGCACGACGUccagguccacgggGCU-GCCGg -3'
miRNA:   3'- ugCCCGCgGCGUGCUGCA-------------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 128322 0.7 0.339361
Target:  5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3'
miRNA:   3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 68490 0.7 0.339361
Target:  5'- cCGGGCGCCGCGCugcuGGCGgccGUgggugCGCCc -3'
miRNA:   3'- uGCCCGCGGCGUG----CUGCa--CGa----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 133716 0.7 0.332137
Target:  5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3'
miRNA:   3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 74536 0.71 0.31803
Target:  5'- cGCGGaGacgcgcucCGCCGCGCGGCGcgugaUGCUgGCCGc -3'
miRNA:   3'- -UGCC-C--------GCGGCGUGCUGC-----ACGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133537 0.71 0.31803
Target:  5'- cGCGGGCGCCGCGCu-----CUCGCCc -3'
miRNA:   3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 130785 0.71 0.311147
Target:  5'- cUGGGCGCCGCcgguGCGGC-UGCUgCGCUu -3'
miRNA:   3'- uGCCCGCGGCG----UGCUGcACGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 38484 0.71 0.304379
Target:  5'- cCGGGCGCgCGCGuCGcCGaGCUgGCCGa -3'
miRNA:   3'- uGCCCGCG-GCGU-GCuGCaCGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 29218 0.71 0.304379
Target:  5'- uGCGcaGCGCCGCGCGGCcggGCgUCGCCu -3'
miRNA:   3'- -UGCc-CGCGGCGUGCUGca-CG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 3010 0.71 0.304379
Target:  5'- gACGGGCuCCGgcaGCG-CGUGCgCGCCGa -3'
miRNA:   3'- -UGCCCGcGGCg--UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 25344 0.71 0.297724
Target:  5'- -aGGGCGCCacguCGCGGCGcGuCUCGCUGg -3'
miRNA:   3'- ugCCCGCGGc---GUGCUGCaC-GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 99293 0.71 0.291182
Target:  5'- cCuGGCGCgGCGCGGCGUuccGCagCGCCGg -3'
miRNA:   3'- uGcCCGCGgCGUGCUGCA---CGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 92655 0.72 0.272233
Target:  5'- cCGGGCGUCGCACcACG-GCcuccuUCGCCa -3'
miRNA:   3'- uGCCCGCGGCGUGcUGCaCG-----AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.