Results 61 - 80 of 263 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 3010 | 0.71 | 0.304379 |
Target: 5'- gACGGGCuCCGgcaGCG-CGUGCgCGCCGa -3' miRNA: 3'- -UGCCCGcGGCg--UGCuGCACGaGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 29218 | 0.71 | 0.304379 |
Target: 5'- uGCGcaGCGCCGCGCGGCcggGCgUCGCCu -3' miRNA: 3'- -UGCc-CGCGGCGUGCUGca-CG-AGCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 39946 | 0.7 | 0.369384 |
Target: 5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3' miRNA: 3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 28484 | 0.7 | 0.377169 |
Target: 5'- cACGGauGCgGCCGCGCGGCGcGCggUCGCgCGg -3' miRNA: 3'- -UGCC--CG-CGGCGUGCUGCaCG--AGCG-GC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 123668 | 0.7 | 0.377169 |
Target: 5'- cCuGGCGCCGCcgcucccccGCGGCGggaccggGCUCGUCGc -3' miRNA: 3'- uGcCCGCGGCG---------UGCUGCa------CGAGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 99165 | 0.7 | 0.377169 |
Target: 5'- gGCGuccGCGCCGCGCgGACGaUGCgCGUCGa -3' miRNA: 3'- -UGCc--CGCGGCGUG-CUGC-ACGaGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 47489 | 0.69 | 0.385063 |
Target: 5'- cGCGGGaccuGCCGC-CGccCGUGCggaCGCCGg -3' miRNA: 3'- -UGCCCg---CGGCGuGCu-GCACGa--GCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 867 | 0.69 | 0.385063 |
Target: 5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3' miRNA: 3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 8986 | 0.69 | 0.401177 |
Target: 5'- cGCGGGCGCCGCAUaGGCaUGCaUC-CUGu -3' miRNA: 3'- -UGCCCGCGGCGUG-CUGcACG-AGcGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 133573 | 0.69 | 0.409392 |
Target: 5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3' miRNA: 3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 36535 | 0.7 | 0.369384 |
Target: 5'- cGCGGGCGUCcC-CGGCGgcuggGCggCGCCGg -3' miRNA: 3'- -UGCCCGCGGcGuGCUGCa----CGa-GCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 122208 | 0.7 | 0.346698 |
Target: 5'- cGCGGGCGCggaCGUGuCGGCGcGCaCGCCGg -3' miRNA: 3'- -UGCCCGCG---GCGU-GCUGCaCGaGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 38484 | 0.71 | 0.304379 |
Target: 5'- cCGGGCGCgCGCGuCGcCGaGCUgGCCGa -3' miRNA: 3'- uGCCCGCG-GCGU-GCuGCaCGAgCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 130785 | 0.71 | 0.311147 |
Target: 5'- cUGGGCGCCGCcgguGCGGC-UGCUgCGCUu -3' miRNA: 3'- uGCCCGCGGCG----UGCUGcACGA-GCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 133537 | 0.71 | 0.31803 |
Target: 5'- cGCGGGCGCCGCGCu-----CUCGCCc -3' miRNA: 3'- -UGCCCGCGGCGUGcugcacGAGCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 74536 | 0.71 | 0.31803 |
Target: 5'- cGCGGaGacgcgcucCGCCGCGCGGCGcgugaUGCUgGCCGc -3' miRNA: 3'- -UGCC-C--------GCGGCGUGCUGC-----ACGAgCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 133716 | 0.7 | 0.332137 |
Target: 5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3' miRNA: 3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 68490 | 0.7 | 0.339361 |
Target: 5'- cCGGGCGCCGCGCugcuGGCGgccGUgggugCGCCc -3' miRNA: 3'- uGCCCGCGGCGUG----CUGCa--CGa----GCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 128322 | 0.7 | 0.339361 |
Target: 5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3' miRNA: 3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 7477 | 0.7 | 0.345959 |
Target: 5'- -aGGGCG-CGCACGACGUccagguccacgggGCU-GCCGg -3' miRNA: 3'- ugCCCGCgGCGUGCUGCA-------------CGAgCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home