Results 81 - 100 of 263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 77205 | 0.69 | 0.423597 |
Target: 5'- aGCGGGCGCuCGCagagcggccuggcuGCGGCGUaGUacgCGCCc -3' miRNA: 3'- -UGCCCGCG-GCG--------------UGCUGCA-CGa--GCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 99654 | 0.69 | 0.426135 |
Target: 5'- cGCGGcauCGCCGCGCGGCuggGCgCGCCc -3' miRNA: 3'- -UGCCc--GCGGCGUGCUGca-CGaGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 748 | 0.68 | 0.438093 |
Target: 5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3' miRNA: 3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 40826 | 0.68 | 0.442411 |
Target: 5'- gGCGGGCgucuuccgcaugaGCCGCACGGgacacGCgUCGCCGu -3' miRNA: 3'- -UGCCCG-------------CGGCGUGCUgca--CG-AGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 42760 | 0.68 | 0.443277 |
Target: 5'- uGCGGGUcCCGCGCGuucgUGUGCUCgGgCGg -3' miRNA: 3'- -UGCCCGcGGCGUGCu---GCACGAG-CgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 109175 | 0.68 | 0.451993 |
Target: 5'- cGCGccGCGCCGCGCgGGCGgaGCUCGgCGu -3' miRNA: 3'- -UGCc-CGCGGCGUG-CUGCa-CGAGCgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 63150 | 0.68 | 0.460801 |
Target: 5'- uGCcGGUGCCGCcgcccgAgGACGUGCUgagccCGCCGc -3' miRNA: 3'- -UGcCCGCGGCG------UgCUGCACGA-----GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 133573 | 0.69 | 0.409392 |
Target: 5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3' miRNA: 3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 8986 | 0.69 | 0.401177 |
Target: 5'- cGCGGGCGCCGCAUaGGCaUGCaUC-CUGu -3' miRNA: 3'- -UGCCCGCGGCGUG-CUGcACG-AGcGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 867 | 0.69 | 0.385063 |
Target: 5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3' miRNA: 3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 128322 | 0.7 | 0.339361 |
Target: 5'- cGCGcGGCGCgaGCGCGAC-UGCUcgguccaaCGCCGg -3' miRNA: 3'- -UGC-CCGCGg-CGUGCUGcACGA--------GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 7477 | 0.7 | 0.345959 |
Target: 5'- -aGGGCG-CGCACGACGUccagguccacgggGCU-GCCGg -3' miRNA: 3'- ugCCCGCgGCGUGCUGCA-------------CGAgCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 122208 | 0.7 | 0.346698 |
Target: 5'- cGCGGGCGCggaCGUGuCGGCGcGCaCGCCGg -3' miRNA: 3'- -UGCCCGCG---GCGU-GCUGCaCGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 36535 | 0.7 | 0.369384 |
Target: 5'- cGCGGGCGUCcC-CGGCGgcuggGCggCGCCGg -3' miRNA: 3'- -UGCCCGCGGcGuGCUGCa----CGa-GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 39946 | 0.7 | 0.369384 |
Target: 5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3' miRNA: 3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 28484 | 0.7 | 0.377169 |
Target: 5'- cACGGauGCgGCCGCGCGGCGcGCggUCGCgCGg -3' miRNA: 3'- -UGCC--CG-CGGCGUGCUGCaCG--AGCG-GC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 123668 | 0.7 | 0.377169 |
Target: 5'- cCuGGCGCCGCcgcucccccGCGGCGggaccggGCUCGUCGc -3' miRNA: 3'- uGcCCGCGGCG---------UGCUGCa------CGAGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 99165 | 0.7 | 0.377169 |
Target: 5'- gGCGuccGCGCCGCGCgGACGaUGCgCGUCGa -3' miRNA: 3'- -UGCc--CGCGGCGUG-CUGC-ACGaGCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 47489 | 0.69 | 0.385063 |
Target: 5'- cGCGGGaccuGCCGC-CGccCGUGCggaCGCCGg -3' miRNA: 3'- -UGCCCg---CGGCGuGCu-GCACGa--GCGGC- -5' |
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25720 | 3' | -63.1 | NC_005337.1 | + | 80387 | 0.68 | 0.460801 |
Target: 5'- aGCGGG-GCCGCccCGACGcgcUGCUUGCa- -3' miRNA: 3'- -UGCCCgCGGCGu-GCUGC---ACGAGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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