miRNA display CGI


Results 101 - 120 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 132075 0.68 0.477782
Target:  5'- cCGGGCcgcgcccgcguccGCCGCcuGCGcCGUGCgcgucggCGCCGu -3'
miRNA:   3'- uGCCCG-------------CGGCG--UGCuGCACGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 97104 0.68 0.478685
Target:  5'- uGCuGGUGCCGCA-GugGcGCUCGgCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgCugCaCGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 128786 0.68 0.478685
Target:  5'- cACGGGUG-CGCGCGAUcaugggcggGUGCggcugCGCCc -3'
miRNA:   3'- -UGCCCGCgGCGUGCUG---------CACGa----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 133455 0.68 0.478685
Target:  5'- cCGGGC-CCGCGCGcGCGgacgGCUcCGCgGa -3'
miRNA:   3'- uGCCCGcGGCGUGC-UGCa---CGA-GCGgC- -5'
25720 3' -63.1 NC_005337.1 + 10571 0.67 0.487754
Target:  5'- cACGGGCgugcccagccGCCGCACGGCGU-C-CGUgGa -3'
miRNA:   3'- -UGCCCG----------CGGCGUGCUGCAcGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 40826 0.68 0.442411
Target:  5'- gGCGGGCgucuuccgcaugaGCCGCACGGgacacGCgUCGCCGu -3'
miRNA:   3'- -UGCCCG-------------CGGCGUGCUgca--CG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39946 0.7 0.369384
Target:  5'- gGCGGGCGCCuCGCG-CGggcGCUCGaCGc -3'
miRNA:   3'- -UGCCCGCGGcGUGCuGCa--CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 28484 0.7 0.377169
Target:  5'- cACGGauGCgGCCGCGCGGCGcGCggUCGCgCGg -3'
miRNA:   3'- -UGCC--CG-CGGCGUGCUGCaCG--AGCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 123668 0.7 0.377169
Target:  5'- cCuGGCGCCGCcgcucccccGCGGCGggaccggGCUCGUCGc -3'
miRNA:   3'- uGcCCGCGGCG---------UGCUGCa------CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 99165 0.7 0.377169
Target:  5'- gGCGuccGCGCCGCGCgGACGaUGCgCGUCGa -3'
miRNA:   3'- -UGCc--CGCGGCGUG-CUGC-ACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 47489 0.69 0.385063
Target:  5'- cGCGGGaccuGCCGC-CGccCGUGCggaCGCCGg -3'
miRNA:   3'- -UGCCCg---CGGCGuGCu-GCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 8986 0.69 0.401177
Target:  5'- cGCGGGCGCCGCAUaGGCaUGCaUC-CUGu -3'
miRNA:   3'- -UGCCCGCGGCGUG-CUGcACG-AGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 103332 0.69 0.412708
Target:  5'- cCGGGCGgcucacccgcCCGCugcugguggucgagaACGGCGUGCUCGUg- -3'
miRNA:   3'- uGCCCGC----------GGCG---------------UGCUGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 55993 0.69 0.417712
Target:  5'- uGCGGGCGaCCuCGCuGGCGggGCucaUCGCCGa -3'
miRNA:   3'- -UGCCCGC-GGcGUG-CUGCa-CG---AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 111129 0.69 0.417712
Target:  5'- cACGGGCGUgaagaGCAgGAUGUGCUUGaagCGg -3'
miRNA:   3'- -UGCCCGCGg----CGUgCUGCACGAGCg--GC- -5'
25720 3' -63.1 NC_005337.1 + 77205 0.69 0.423597
Target:  5'- aGCGGGCGCuCGCagagcggccuggcuGCGGCGUaGUacgCGCCc -3'
miRNA:   3'- -UGCCCGCG-GCG--------------UGCUGCA-CGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 99654 0.69 0.426135
Target:  5'- cGCGGcauCGCCGCGCGGCuggGCgCGCCc -3'
miRNA:   3'- -UGCCc--GCGGCGUGCUGca-CGaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.