miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 11153 1.07 0.000869
Target:  5'- gACGGGCGCCGCACGACGUGCUCGCCGu -3'
miRNA:   3'- -UGCCCGCGGCGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 106031 0.72 0.272233
Target:  5'- cGCGuGGUGCCGCGCGACG-GCguuUCGgUGa -3'
miRNA:   3'- -UGC-CCGCGGCGUGCUGCaCG---AGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 127888 0.72 0.278437
Target:  5'- cGCGcGGCGCCGgcgaGCG-CGUGCggGCCGa -3'
miRNA:   3'- -UGC-CCGCGGCg---UGCuGCACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 33693 0.66 0.601609
Target:  5'- gGCGGGCGCCaccuccucgaAgGugGUGg-CGCCGa -3'
miRNA:   3'- -UGCCCGCGGcg--------UgCugCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 97683 0.78 0.114881
Target:  5'- cGCGGGCG-UGCACGugGUGgacgucuucuuCUCGCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCAC-----------GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 105162 0.78 0.114881
Target:  5'- uGCuGGCGCUGCACGGCGUGgUCGaCCc -3'
miRNA:   3'- -UGcCCGCGGCGUGCUGCACgAGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 126939 0.77 0.136701
Target:  5'- gGCGGGCGCggacgugaacgCGCGCGACGUGUgcggguacaCGCCa -3'
miRNA:   3'- -UGCCCGCG-----------GCGUGCUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 63111 0.75 0.17033
Target:  5'- cACGGGCGCCcCACGAUGcaggGCUCGgUGa -3'
miRNA:   3'- -UGCCCGCGGcGUGCUGCa---CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 35323 0.74 0.196693
Target:  5'- gAC-GGCGCCGCGgacccaGGCGUGCguggCGCCGa -3'
miRNA:   3'- -UGcCCGCGGCGUg-----CUGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 10006 0.72 0.260159
Target:  5'- gGCcGGCGCCGCcguCGuCGUGCUCGaucCCGg -3'
miRNA:   3'- -UGcCCGCGGCGu--GCuGCACGAGC---GGC- -5'
25720 3' -63.1 NC_005337.1 + 78553 0.73 0.231885
Target:  5'- cACGGGCGCgccgUGCGCGuCGUGCUUGaaGa -3'
miRNA:   3'- -UGCCCGCG----GCGUGCuGCACGAGCggC- -5'
25720 3' -63.1 NC_005337.1 + 34613 0.74 0.196226
Target:  5'- cACGGGCgcgcccaGCCGCGCGGCGaUGCcgCGCaCGu -3'
miRNA:   3'- -UGCCCG-------CGGCGUGCUGC-ACGa-GCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 91904 0.82 0.054886
Target:  5'- cCGGGuCGCCGguCACGACGUGCgUCGCCGc -3'
miRNA:   3'- uGCCC-GCGGC--GUGCUGCACG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 88233 0.73 0.237325
Target:  5'- gGCGGGCuGCUGCgaagACGuCGUGCgUGCCGg -3'
miRNA:   3'- -UGCCCG-CGGCG----UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 58017 0.79 0.089304
Target:  5'- cCGGGCgugcucggccagGCCGCgcucuucgacgGCGGCGUGCUCGCCa -3'
miRNA:   3'- uGCCCG------------CGGCG-----------UGCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 14408 0.74 0.187083
Target:  5'- -gGaGGUugugcuuGCCGCGCGACGUGC-CGCCGc -3'
miRNA:   3'- ugC-CCG-------CGGCGUGCUGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 110507 0.73 0.237325
Target:  5'- gACGuGGCGCuCGCGCGugGUGaacacggCGCCc -3'
miRNA:   3'- -UGC-CCGCG-GCGUGCugCACga-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 92659 0.72 0.278437
Target:  5'- aACGaGGUGCUGCAcugcuuCGACGUGCUCaCCu -3'
miRNA:   3'- -UGC-CCGCGGCGU------GCUGCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 53660 0.79 0.091596
Target:  5'- cACGcGCGCUuCGCGGCGUGCUCGCUGg -3'
miRNA:   3'- -UGCcCGCGGcGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 54108 0.77 0.133365
Target:  5'- uACGGGCGCUgcuacguggaGCGCGACG-GCcgCGCCGc -3'
miRNA:   3'- -UGCCCGCGG----------CGUGCUGCaCGa-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.