miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 25066 0.71 0.304379
Target:  5'- uGCGGGCggcguucgucaaGCUGCGCGACGccgaGCUcCGCCc -3'
miRNA:   3'- -UGCCCG------------CGGCGUGCUGCa---CGA-GCGGc -5'
25720 3' -63.1 NC_005337.1 + 127888 0.72 0.278437
Target:  5'- cGCGcGGCGCCGgcgaGCG-CGUGCggGCCGa -3'
miRNA:   3'- -UGC-CCGCGGCg---UGCuGCACGagCGGC- -5'
25720 3' -63.1 NC_005337.1 + 34613 0.74 0.196226
Target:  5'- cACGGGCgcgcccaGCCGCGCGGCGaUGCcgCGCaCGu -3'
miRNA:   3'- -UGCCCG-------CGGCGUGCUGC-ACGa-GCG-GC- -5'
25720 3' -63.1 NC_005337.1 + 53660 0.79 0.091596
Target:  5'- cACGcGCGCUuCGCGGCGUGCUCGCUGg -3'
miRNA:   3'- -UGCcCGCGGcGUGCUGCACGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 4456 0.7 0.339361
Target:  5'- aACGGGCGaaugaucgaCGCGCGGCagGUGCucugcaUCGCCa -3'
miRNA:   3'- -UGCCCGCg--------GCGUGCUG--CACG------AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 74619 0.71 0.325026
Target:  5'- cGCGGGCGCCGacaAgGugGUGCaC-CCGg -3'
miRNA:   3'- -UGCCCGCGGCg--UgCugCACGaGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 106031 0.72 0.272233
Target:  5'- cGCGuGGUGCCGCGCGACG-GCguuUCGgUGa -3'
miRNA:   3'- -UGC-CCGCGGCGUGCUGCaCG---AGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 58017 0.79 0.089304
Target:  5'- cCGGGCgugcucggccagGCCGCgcucuucgacgGCGGCGUGCUCGCCa -3'
miRNA:   3'- uGCCCG------------CGGCG-----------UGCUGCACGAGCGGc -5'
25720 3' -63.1 NC_005337.1 + 127405 0.71 0.322916
Target:  5'- gACGGGCGCaCGCugcugcaccaccugGCGAcCGUGC-CGCgGg -3'
miRNA:   3'- -UGCCCGCG-GCG--------------UGCU-GCACGaGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 91904 0.82 0.054886
Target:  5'- cCGGGuCGCCGguCACGACGUGCgUCGCCGc -3'
miRNA:   3'- uGCCC-GCGGC--GUGCUGCACG-AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 92659 0.72 0.278437
Target:  5'- aACGaGGUGCUGCAcugcuuCGACGUGCUCaCCu -3'
miRNA:   3'- -UGC-CCGCGGCGU------GCUGCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 82627 0.71 0.311147
Target:  5'- gGCGGGCGCUG-GCGACc-GCggagCGCCGa -3'
miRNA:   3'- -UGCCCGCGGCgUGCUGcaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 88233 0.73 0.237325
Target:  5'- gGCGGGCuGCUGCgaagACGuCGUGCgUGCCGg -3'
miRNA:   3'- -UGCCCG-CGGCG----UGCuGCACGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 35323 0.74 0.196693
Target:  5'- gAC-GGCGCCGCGgacccaGGCGUGCguggCGCCGa -3'
miRNA:   3'- -UGcCCGCGGCGUg-----CUGCACGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 126939 0.77 0.136701
Target:  5'- gGCGGGCGCggacgugaacgCGCGCGACGUGUgcggguacaCGCCa -3'
miRNA:   3'- -UGCCCGCG-----------GCGUGCUGCACGa--------GCGGc -5'
25720 3' -63.1 NC_005337.1 + 97683 0.78 0.114881
Target:  5'- cGCGGGCG-UGCACGugGUGgacgucuucuuCUCGCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCAC-----------GAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 105048 0.7 0.354148
Target:  5'- gGCaGGCgacgcccgGCCGCGCGGCGcUGCgcagCGCCu -3'
miRNA:   3'- -UGcCCG--------CGGCGUGCUGC-ACGa---GCGGc -5'
25720 3' -63.1 NC_005337.1 + 131895 0.7 0.346698
Target:  5'- gGCGGGCG-CGCACGugGacGCggUCGaCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCa-CG--AGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 66637 0.7 0.332137
Target:  5'- gGCGGGCGgUGgGaGugGUGCggCGCCGa -3'
miRNA:   3'- -UGCCCGCgGCgUgCugCACGa-GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 76863 0.71 0.327857
Target:  5'- gACGGGCGuCCGgACGGCucggcggaaaucucgGgcagcaGCUCGCCGa -3'
miRNA:   3'- -UGCCCGC-GGCgUGCUG---------------Ca-----CGAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.