Results 41 - 60 of 263 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 64277 | 0.7 | 0.339361 |
Target: 5'- uCGGGCGaCUGCAUGAgGUGCaCGgCGg -3' miRNA: 3'- uGCCCGC-GGCGUGCUgCACGaGCgGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 106031 | 0.72 | 0.272233 |
Target: 5'- cGCGuGGUGCCGCGCGACG-GCguuUCGgUGa -3' miRNA: 3'- -UGC-CCGCGGCGUGCUGCaCG---AGCgGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 58017 | 0.79 | 0.089304 |
Target: 5'- cCGGGCgugcucggccagGCCGCgcucuucgacgGCGGCGUGCUCGCCa -3' miRNA: 3'- uGCCCG------------CGGCG-----------UGCUGCACGAGCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 133716 | 0.7 | 0.332137 |
Target: 5'- cCGcGGCGUaCGCGCGGCGgugGCggaguggCGCCGg -3' miRNA: 3'- uGC-CCGCG-GCGUGCUGCa--CGa------GCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 91904 | 0.82 | 0.054886 |
Target: 5'- cCGGGuCGCCGguCACGACGUGCgUCGCCGc -3' miRNA: 3'- uGCCC-GCGGC--GUGCUGCACG-AGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 57104 | 0.69 | 0.393066 |
Target: 5'- cGCGGGUGgCGC-CGGCaguaccccGUGgUCGCCGc -3' miRNA: 3'- -UGCCCGCgGCGuGCUG--------CACgAGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 97683 | 0.78 | 0.114881 |
Target: 5'- cGCGGGCG-UGCACGugGUGgacgucuucuuCUCGCCGg -3' miRNA: 3'- -UGCCCGCgGCGUGCugCAC-----------GAGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 8146 | 0.69 | 0.393066 |
Target: 5'- cCGGGCauggccGCgCGCACGGCGUGCgCGUa- -3' miRNA: 3'- uGCCCG------CG-GCGUGCUGCACGaGCGgc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 117030 | 0.69 | 0.385063 |
Target: 5'- cCGGGCGCUGC-CGACGcUGCagGUgGa -3' miRNA: 3'- uGCCCGCGGCGuGCUGC-ACGagCGgC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 94149 | 0.7 | 0.377169 |
Target: 5'- -gGGGCGgCGCcuccccACGACGgagaaccGCUUGCCGa -3' miRNA: 3'- ugCCCGCgGCG------UGCUGCa------CGAGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 50985 | 0.7 | 0.364767 |
Target: 5'- -gGGGCGCCGCGCGuucguCGUcggcccggcccucgaGC-CGCCa -3' miRNA: 3'- ugCCCGCGGCGUGCu----GCA---------------CGaGCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 105048 | 0.7 | 0.354148 |
Target: 5'- gGCaGGCgacgcccgGCCGCGCGGCGcUGCgcagCGCCu -3' miRNA: 3'- -UGcCCG--------CGGCGUGCUGC-ACGa---GCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 131895 | 0.7 | 0.346698 |
Target: 5'- gGCGGGCG-CGCACGugGacGCggUCGaCCGg -3' miRNA: 3'- -UGCCCGCgGCGUGCugCa-CG--AGC-GGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 69122 | 0.7 | 0.332137 |
Target: 5'- uGCGGGCgaGCCGCgguccACGGCG-GC-CGCCu -3' miRNA: 3'- -UGCCCG--CGGCG-----UGCUGCaCGaGCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 127405 | 0.71 | 0.322916 |
Target: 5'- gACGGGCGCaCGCugcugcaccaccugGCGAcCGUGC-CGCgGg -3' miRNA: 3'- -UGCCCGCG-GCG--------------UGCU-GCACGaGCGgC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 25066 | 0.71 | 0.304379 |
Target: 5'- uGCGGGCggcguucgucaaGCUGCGCGACGccgaGCUcCGCCc -3' miRNA: 3'- -UGCCCG------------CGGCGUGCUGCa---CGA-GCGGc -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 127888 | 0.72 | 0.278437 |
Target: 5'- cGCGcGGCGCCGgcgaGCG-CGUGCggGCCGa -3' miRNA: 3'- -UGC-CCGCGGCg---UGCuGCACGagCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 88233 | 0.73 | 0.237325 |
Target: 5'- gGCGGGCuGCUGCgaagACGuCGUGCgUGCCGg -3' miRNA: 3'- -UGCCCG-CGGCG----UGCuGCACGaGCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 35323 | 0.74 | 0.196693 |
Target: 5'- gAC-GGCGCCGCGgacccaGGCGUGCguggCGCCGa -3' miRNA: 3'- -UGcCCGCGGCGUg-----CUGCACGa---GCGGC- -5' |
|||||||
25720 | 3' | -63.1 | NC_005337.1 | + | 126939 | 0.77 | 0.136701 |
Target: 5'- gGCGGGCGCggacgugaacgCGCGCGACGUGUgcggguacaCGCCa -3' miRNA: 3'- -UGCCCGCG-----------GCGUGCUGCACGa--------GCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home