miRNA display CGI


Results 61 - 80 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 131895 0.7 0.346698
Target:  5'- gGCGGGCG-CGCACGugGacGCggUCGaCCGg -3'
miRNA:   3'- -UGCCCGCgGCGUGCugCa-CG--AGC-GGC- -5'
25720 3' -63.1 NC_005337.1 + 123695 0.7 0.36171
Target:  5'- cACGGaCGCCGUGCGGCGgcuggGCaCGCCc -3'
miRNA:   3'- -UGCCcGCGGCGUGCUGCa----CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 105162 0.78 0.114881
Target:  5'- uGCuGGCGCUGCACGGCGUGgUCGaCCc -3'
miRNA:   3'- -UGcCCGCGGCGUGCUGCACgAGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 63111 0.75 0.17033
Target:  5'- cACGGGCGCCcCACGAUGcaggGCUCGgUGa -3'
miRNA:   3'- -UGCCCGCGGcGUGCUGCa---CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 70357 0.74 0.216193
Target:  5'- gGCGGuGCGCCGC-CGcACGUGgUCGCg- -3'
miRNA:   3'- -UGCC-CGCGGCGuGC-UGCACgAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 110507 0.73 0.237325
Target:  5'- gACGuGGCGCuCGCGCGugGUGaacacggCGCCc -3'
miRNA:   3'- -UGC-CCGCG-GCGUGCugCACga-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 131010 0.72 0.284116
Target:  5'- cACGuGGcCGCCGCGCaccgcaacgacaaGGCGUGCgcgCGCCu -3'
miRNA:   3'- -UGC-CC-GCGGCGUG-------------CUGCACGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 82627 0.71 0.311147
Target:  5'- gGCGGGCGCUG-GCGACc-GCggagCGCCGa -3'
miRNA:   3'- -UGCCCGCGGCgUGCUGcaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 74619 0.71 0.325026
Target:  5'- cGCGGGCGCCGacaAgGugGUGCaC-CCGg -3'
miRNA:   3'- -UGCCCGCGGCg--UgCugCACGaGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 118244 0.7 0.332137
Target:  5'- gGCaGGCGCCGCAgcGCGUGUaccUGCCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgcUGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 31500 0.68 0.451993
Target:  5'- cCGGGCGUggucaGCACGugGaUGCUCacggugcagguGCCGc -3'
miRNA:   3'- uGCCCGCGg----CGUGCugC-ACGAG-----------CGGC- -5'
25720 3' -63.1 NC_005337.1 + 39118 0.68 0.451993
Target:  5'- gUGGGCuGUCGCAuCGACGUGgaCaGCCu -3'
miRNA:   3'- uGCCCG-CGGCGU-GCUGCACgaG-CGGc -5'
25720 3' -63.1 NC_005337.1 + 86681 0.7 0.377169
Target:  5'- cGCGcGGCGUCGCccacgcccaGCGGCugcgGCUCGUCGg -3'
miRNA:   3'- -UGC-CCGCGGCG---------UGCUGca--CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 87822 0.69 0.382684
Target:  5'- cGCGGcGCGCCGCGCGcagaucgcgaACaucauccacgaccgGUGCaUCGCCa -3'
miRNA:   3'- -UGCC-CGCGGCGUGC----------UG--------------CACG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 8146 0.69 0.393066
Target:  5'- cCGGGCauggccGCgCGCACGGCGUGCgCGUa- -3'
miRNA:   3'- uGCCCG------CG-GCGUGCUGCACGaGCGgc -5'
25720 3' -63.1 NC_005337.1 + 57104 0.69 0.393066
Target:  5'- cGCGGGUGgCGC-CGGCaguaccccGUGgUCGCCGc -3'
miRNA:   3'- -UGCCCGCgGCGuGCUG--------CACgAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 133573 0.69 0.409392
Target:  5'- cGCGGGCGUgCGCGCGA---GCuUCGCCu -3'
miRNA:   3'- -UGCCCGCG-GCGUGCUgcaCG-AGCGGc -5'
25720 3' -63.1 NC_005337.1 + 132602 0.69 0.415206
Target:  5'- cCGGGCaCCGCaACGACGcgGCggcggccaagcucgUCGCCGc -3'
miRNA:   3'- uGCCCGcGGCG-UGCUGCa-CG--------------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 39559 0.68 0.434657
Target:  5'- gGCGGGCGCUcggGUACucguccuCGUGgaCGCCGa -3'
miRNA:   3'- -UGCCCGCGG---CGUGcu-----GCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.