miRNA display CGI


Results 81 - 100 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 11616 0.69 0.382684
Target:  5'- gGCGGGCcaccugcucgacgaGUCGCgucuuGCGGCgGUGCUCGCgGa -3'
miRNA:   3'- -UGCCCG--------------CGGCG-----UGCUG-CACGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36890 0.69 0.393066
Target:  5'- uGCGGuucGCGCgGCGCGGCGUGgC-CGUCa -3'
miRNA:   3'- -UGCC---CGCGgCGUGCUGCAC-GaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 38821 0.69 0.400361
Target:  5'- -gGGGCGCuacgccgCGCugGACGcGUaCGCCGg -3'
miRNA:   3'- ugCCCGCG-------GCGugCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 4582 0.69 0.409392
Target:  5'- cGCGGGCGCgGCgacuGCG-CGUGCUgGUg- -3'
miRNA:   3'- -UGCCCGCGgCG----UGCuGCACGAgCGgc -5'
25720 3' -63.1 NC_005337.1 + 39559 0.68 0.434657
Target:  5'- gGCGGGCGCUcggGUACucguccuCGUGgaCGCCGa -3'
miRNA:   3'- -UGCCCGCGG---CGUGcu-----GCACgaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 748 0.68 0.438093
Target:  5'- aGCGcGGCGCC-CGCGGCcucgacggcggccauGUGCUgcgCGCCGc -3'
miRNA:   3'- -UGC-CCGCGGcGUGCUG---------------CACGA---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 118244 0.7 0.332137
Target:  5'- gGCaGGCGCCGCAgcGCGUGUaccUGCCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgcUGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 74619 0.71 0.325026
Target:  5'- cGCGGGCGCCGacaAgGugGUGCaC-CCGg -3'
miRNA:   3'- -UGCCCGCGGCg--UgCugCACGaGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 82627 0.71 0.311147
Target:  5'- gGCGGGCGCUG-GCGACc-GCggagCGCCGa -3'
miRNA:   3'- -UGCCCGCGGCgUGCUGcaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 64789 0.68 0.460801
Target:  5'- cCGGGgGuccuCCGCGCGGCG-GCacgaCGCCGg -3'
miRNA:   3'- uGCCCgC----GGCGUGCUGCaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 91659 0.68 0.478685
Target:  5'- cCGcGGUGCCGCACauGGCGggcGCUagcaGCCGc -3'
miRNA:   3'- uGC-CCGCGGCGUG--CUGCa--CGAg---CGGC- -5'
25720 3' -63.1 NC_005337.1 + 57804 0.67 0.487754
Target:  5'- cGCGGGCaGCCGCAUcuGCGUGgUCaUCGa -3'
miRNA:   3'- -UGCCCG-CGGCGUGc-UGCACgAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 100403 0.67 0.496903
Target:  5'- cGCGGGCGCgCGCuACGAgauCGacGCgCGCCa -3'
miRNA:   3'- -UGCCCGCG-GCG-UGCU---GCa-CGaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 127269 0.67 0.506128
Target:  5'- gGCGGGCgcggacguccgcGCCauggacaaGCACGGCGUcaccccGCUgGCCGu -3'
miRNA:   3'- -UGCCCG------------CGG--------CGUGCUGCA------CGAgCGGC- -5'
25720 3' -63.1 NC_005337.1 + 105162 0.78 0.114881
Target:  5'- uGCuGGCGCUGCACGGCGUGgUCGaCCc -3'
miRNA:   3'- -UGcCCGCGGCGUGCUGCACgAGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 63111 0.75 0.17033
Target:  5'- cACGGGCGCCcCACGAUGcaggGCUCGgUGa -3'
miRNA:   3'- -UGCCCGCGGcGUGCUGCa---CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 70357 0.74 0.216193
Target:  5'- gGCGGuGCGCCGC-CGcACGUGgUCGCg- -3'
miRNA:   3'- -UGCC-CGCGGCGuGC-UGCACgAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 110507 0.73 0.237325
Target:  5'- gACGuGGCGCuCGCGCGugGUGaacacggCGCCc -3'
miRNA:   3'- -UGC-CCGCG-GCGUGCugCACga-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 131010 0.72 0.284116
Target:  5'- cACGuGGcCGCCGCGCaccgcaacgacaaGGCGUGCgcgCGCCu -3'
miRNA:   3'- -UGC-CC-GCGGCGUG-------------CUGCACGa--GCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.