miRNA display CGI


Results 101 - 120 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 3' -63.1 NC_005337.1 + 83511 0.67 0.487754
Target:  5'- cGCGGGaaCCGCACG-CGUGCgccCGCg- -3'
miRNA:   3'- -UGCCCgcGGCGUGCuGCACGa--GCGgc -5'
25720 3' -63.1 NC_005337.1 + 72407 0.67 0.515427
Target:  5'- -gGGGUGgCGCgACGuCGUGCacuacgagUCGCCGc -3'
miRNA:   3'- ugCCCGCgGCG-UGCuGCACG--------AGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 101944 0.67 0.524793
Target:  5'- gACGagcuGCGcCCGCACGugGccugccGCUCGCUGu -3'
miRNA:   3'- -UGCc---CGC-GGCGUGCugCa-----CGAGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 4909 0.67 0.534223
Target:  5'- aACGGGCGgUGgACGACG-GcCUC-CCGg -3'
miRNA:   3'- -UGCCCGCgGCgUGCUGCaC-GAGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 80720 0.67 0.534223
Target:  5'- cACGGG-GaaGCGCG-UGUGCUCGCg- -3'
miRNA:   3'- -UGCCCgCggCGUGCuGCACGAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 38821 0.69 0.400361
Target:  5'- -gGGGCGCuacgccgCGCugGACGcGUaCGCCGg -3'
miRNA:   3'- ugCCCGCG-------GCGugCUGCaCGaGCGGC- -5'
25720 3' -63.1 NC_005337.1 + 36890 0.69 0.393066
Target:  5'- uGCGGuucGCGCgGCGCGGCGUGgC-CGUCa -3'
miRNA:   3'- -UGCC---CGCGgCGUGCUGCAC-GaGCGGc -5'
25720 3' -63.1 NC_005337.1 + 105162 0.78 0.114881
Target:  5'- uGCuGGCGCUGCACGGCGUGgUCGaCCc -3'
miRNA:   3'- -UGcCCGCGGCGUGCUGCACgAGC-GGc -5'
25720 3' -63.1 NC_005337.1 + 63111 0.75 0.17033
Target:  5'- cACGGGCGCCcCACGAUGcaggGCUCGgUGa -3'
miRNA:   3'- -UGCCCGCGGcGUGCUGCa---CGAGCgGC- -5'
25720 3' -63.1 NC_005337.1 + 70357 0.74 0.216193
Target:  5'- gGCGGuGCGCCGC-CGcACGUGgUCGCg- -3'
miRNA:   3'- -UGCC-CGCGGCGuGC-UGCACgAGCGgc -5'
25720 3' -63.1 NC_005337.1 + 110507 0.73 0.237325
Target:  5'- gACGuGGCGCuCGCGCGugGUGaacacggCGCCc -3'
miRNA:   3'- -UGC-CCGCG-GCGUGCugCACga-----GCGGc -5'
25720 3' -63.1 NC_005337.1 + 131010 0.72 0.284116
Target:  5'- cACGuGGcCGCCGCGCaccgcaacgacaaGGCGUGCgcgCGCCu -3'
miRNA:   3'- -UGC-CC-GCGGCGUG-------------CUGCACGa--GCGGc -5'
25720 3' -63.1 NC_005337.1 + 82627 0.71 0.311147
Target:  5'- gGCGGGCGCUG-GCGACc-GCggagCGCCGa -3'
miRNA:   3'- -UGCCCGCGGCgUGCUGcaCGa---GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 74619 0.71 0.325026
Target:  5'- cGCGGGCGCCGacaAgGugGUGCaC-CCGg -3'
miRNA:   3'- -UGCCCGCGGCg--UgCugCACGaGcGGC- -5'
25720 3' -63.1 NC_005337.1 + 118244 0.7 0.332137
Target:  5'- gGCaGGCGCCGCAgcGCGUGUaccUGCCGg -3'
miRNA:   3'- -UGcCCGCGGCGUgcUGCACGa--GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 93041 0.7 0.346698
Target:  5'- cAUGGGCGaggacCUGUACGugGUGCUCuCCu -3'
miRNA:   3'- -UGCCCGC-----GGCGUGCugCACGAGcGGc -5'
25720 3' -63.1 NC_005337.1 + 75259 0.7 0.360949
Target:  5'- aGCGGGCGCCacgaccGCACGGCGcucuugaUGCgCGCg- -3'
miRNA:   3'- -UGCCCGCGG------CGUGCUGC-------ACGaGCGgc -5'
25720 3' -63.1 NC_005337.1 + 127961 0.7 0.369384
Target:  5'- gGCGGagauccGCGCCauGCGCGAgGUGCgcugcaaCGCCGa -3'
miRNA:   3'- -UGCC------CGCGG--CGUGCUgCACGa------GCGGC- -5'
25720 3' -63.1 NC_005337.1 + 11616 0.69 0.382684
Target:  5'- gGCGGGCcaccugcucgacgaGUCGCgucuuGCGGCgGUGCUCGCgGa -3'
miRNA:   3'- -UGCCCG--------------CGGCG-----UGCUG-CACGAGCGgC- -5'
25720 3' -63.1 NC_005337.1 + 867 0.69 0.385063
Target:  5'- cGCGGGCGCgGC-CgGGCGgaagaGCgCGCCGa -3'
miRNA:   3'- -UGCCCGCGgCGuG-CUGCa----CGaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.