miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 5' -54.1 NC_005337.1 + 88955 0.66 0.940695
Target:  5'- cGCGCGGAGgcggaggGCG-CGguccCGGUGUGCg -3'
miRNA:   3'- aCGCGCUUCa------UGUaGCac--GCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 74480 0.66 0.940695
Target:  5'- cGC-UGGAcgcGUACAUCGUGCGG-GUAg -3'
miRNA:   3'- aCGcGCUU---CAUGUAGCACGCCaCGUg -5'
25720 5' -54.1 NC_005337.1 + 109722 0.66 0.940695
Target:  5'- gGCGcCGGAacgccGaGCAgUCG-GCGGUGCGCa -3'
miRNA:   3'- aCGC-GCUU-----CaUGU-AGCaCGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 128488 0.66 0.940695
Target:  5'- gUGCucGCGGGcGUGCGUCGcguacGUGGUcGCGCg -3'
miRNA:   3'- -ACG--CGCUU-CAUGUAGCa----CGCCA-CGUG- -5'
25720 5' -54.1 NC_005337.1 + 40227 0.66 0.940695
Target:  5'- aGCGCGGAGaaguCGUCGgccGCGccGCGCc -3'
miRNA:   3'- aCGCGCUUCau--GUAGCa--CGCcaCGUG- -5'
25720 5' -54.1 NC_005337.1 + 32518 0.66 0.940214
Target:  5'- gGUGCcguucuuGAAGgugaGCAgCGUGCGGcGCACg -3'
miRNA:   3'- aCGCG-------CUUCa---UGUaGCACGCCaCGUG- -5'
25720 5' -54.1 NC_005337.1 + 2298 0.66 0.935777
Target:  5'- cUGCgGCGggGUcgggaGCGUCG-GUGGcgGCAUu -3'
miRNA:   3'- -ACG-CGCuuCA-----UGUAGCaCGCCa-CGUG- -5'
25720 5' -54.1 NC_005337.1 + 12697 0.66 0.935777
Target:  5'- gGCGCGc-GUACA---UGCGGUGCuCg -3'
miRNA:   3'- aCGCGCuuCAUGUagcACGCCACGuG- -5'
25720 5' -54.1 NC_005337.1 + 67700 0.66 0.935777
Target:  5'- uUGCG-GAGGUACuucAUCGUcuucucgggccGCGG-GCGCa -3'
miRNA:   3'- -ACGCgCUUCAUG---UAGCA-----------CGCCaCGUG- -5'
25720 5' -54.1 NC_005337.1 + 82268 0.66 0.935777
Target:  5'- cGCGCGGccGUccgucacgGCGUCGUaGUGGUGCc- -3'
miRNA:   3'- aCGCGCUu-CA--------UGUAGCA-CGCCACGug -5'
25720 5' -54.1 NC_005337.1 + 110319 0.66 0.930608
Target:  5'- cGCGUGAAGUACAg---GaUGGUGCu- -3'
miRNA:   3'- aCGCGCUUCAUGUagcaC-GCCACGug -5'
25720 5' -54.1 NC_005337.1 + 92524 0.66 0.930608
Target:  5'- cUGCGCGGccgcccCAUgGacGCGGUGCGCg -3'
miRNA:   3'- -ACGCGCUucau--GUAgCa-CGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 100633 0.66 0.930608
Target:  5'- cGCGCGAGGaGCAUCGgauauacGUGG-GCc- -3'
miRNA:   3'- aCGCGCUUCaUGUAGCa------CGCCaCGug -5'
25720 5' -54.1 NC_005337.1 + 25133 0.66 0.925186
Target:  5'- aGCGCGAuGUugGgguuguccggCGacuugaaguucuUGUGGUGCACg -3'
miRNA:   3'- aCGCGCUuCAugUa---------GC------------ACGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 36202 0.66 0.92351
Target:  5'- aGCGCG-GGUuCGUCGUuuuuugcgccggccGCGGcGCGCu -3'
miRNA:   3'- aCGCGCuUCAuGUAGCA--------------CGCCaCGUG- -5'
25720 5' -54.1 NC_005337.1 + 11503 0.66 0.919511
Target:  5'- -aUGCGAAGacGCGUCGUGCgccGGgcaGCGCa -3'
miRNA:   3'- acGCGCUUCa-UGUAGCACG---CCa--CGUG- -5'
25720 5' -54.1 NC_005337.1 + 102172 0.66 0.919511
Target:  5'- aUGCGCGccgccauGUACAaCGUGCuGGagacgcUGCGCa -3'
miRNA:   3'- -ACGCGCuu-----CAUGUaGCACG-CC------ACGUG- -5'
25720 5' -54.1 NC_005337.1 + 57277 0.66 0.919511
Target:  5'- cGCGCGggGccgGCG-CGcGCGGcUGCGg -3'
miRNA:   3'- aCGCGCuuCa--UGUaGCaCGCC-ACGUg -5'
25720 5' -54.1 NC_005337.1 + 123045 0.66 0.919511
Target:  5'- cUGCGCaccGAGGUGCA-CcUGCGGUacgGCAUg -3'
miRNA:   3'- -ACGCG---CUUCAUGUaGcACGCCA---CGUG- -5'
25720 5' -54.1 NC_005337.1 + 71323 0.66 0.919511
Target:  5'- gGCgGCGAcccGCG-CGgcgGCGGUGCACa -3'
miRNA:   3'- aCG-CGCUucaUGUaGCa--CGCCACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.