miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25720 5' -54.1 NC_005337.1 + 1160 0.67 0.89431
Target:  5'- aGCGCGccg-GCGgagCGgcccgcuagGCGGUGCGCg -3'
miRNA:   3'- aCGCGCuucaUGUa--GCa--------CGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 2298 0.66 0.935777
Target:  5'- cUGCgGCGggGUcgggaGCGUCG-GUGGcgGCAUu -3'
miRNA:   3'- -ACG-CGCuuCA-----UGUAGCaCGCCa-CGUG- -5'
25720 5' -54.1 NC_005337.1 + 2600 0.74 0.531348
Target:  5'- cGCGCGAAGUcgaaGUCGUucagcGCGGcGCGCa -3'
miRNA:   3'- aCGCGCUUCAug--UAGCA-----CGCCaCGUG- -5'
25720 5' -54.1 NC_005337.1 + 3248 0.72 0.666879
Target:  5'- cGCGCGcacgccuUGUCGuUGCGGUGCGCg -3'
miRNA:   3'- aCGCGCuucau--GUAGC-ACGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 3487 0.7 0.738919
Target:  5'- cUGCGCGugcuGGUGCAggagguugUUGUGgcgggcguccaCGGUGCACa -3'
miRNA:   3'- -ACGCGCu---UCAUGU--------AGCAC-----------GCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 4586 0.7 0.738919
Target:  5'- gGCGCGgcGacUGCG-CGUGCuGGUGCAg -3'
miRNA:   3'- aCGCGCuuC--AUGUaGCACG-CCACGUg -5'
25720 5' -54.1 NC_005337.1 + 4762 0.68 0.880243
Target:  5'- cGCGCGAgcAGcGCGUCGaugacgcGCGGguccgUGCACg -3'
miRNA:   3'- aCGCGCU--UCaUGUAGCa------CGCC-----ACGUG- -5'
25720 5' -54.1 NC_005337.1 + 6267 0.69 0.832641
Target:  5'- cUGCGCGGAGcacguccagcaGCGUCGUGuCGGcguUGCAg -3'
miRNA:   3'- -ACGCGCUUCa----------UGUAGCAC-GCC---ACGUg -5'
25720 5' -54.1 NC_005337.1 + 10421 0.69 0.823988
Target:  5'- cUGCGCccaGGAGgACGccugCGcgGCGGUGCGCg -3'
miRNA:   3'- -ACGCG---CUUCaUGUa---GCa-CGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 11188 1.1 0.002781
Target:  5'- cUGCGCGAAGUACAUCGUGCGGUGCACg -3'
miRNA:   3'- -ACGCGCUUCAUGUAGCACGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 11503 0.66 0.919511
Target:  5'- -aUGCGAAGacGCGUCGUGCgccGGgcaGCGCa -3'
miRNA:   3'- acGCGCUUCa-UGUAGCACG---CCa--CGUG- -5'
25720 5' -54.1 NC_005337.1 + 11830 0.67 0.903582
Target:  5'- cUGCGCGAugaAGUcggcgugcaugugccGCAUCGgcGCGGacagGCGCc -3'
miRNA:   3'- -ACGCGCU---UCA---------------UGUAGCa-CGCCa---CGUG- -5'
25720 5' -54.1 NC_005337.1 + 12697 0.66 0.935777
Target:  5'- gGCGCGc-GUACA---UGCGGUGCuCg -3'
miRNA:   3'- aCGCGCuuCAUGUagcACGCCACGuG- -5'
25720 5' -54.1 NC_005337.1 + 17809 0.67 0.913585
Target:  5'- cGCGUGAAGUACuccUCGaUGCGcGcgGCGa -3'
miRNA:   3'- aCGCGCUUCAUGu--AGC-ACGC-Ca-CGUg -5'
25720 5' -54.1 NC_005337.1 + 18460 0.68 0.865244
Target:  5'- aGCGuUGggGU-CG-CGUGgGGUGUACa -3'
miRNA:   3'- aCGC-GCuuCAuGUaGCACgCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 24685 0.68 0.865244
Target:  5'- cGcCGCG-AGUACGagaaCGUGCGGaucgUGCACc -3'
miRNA:   3'- aC-GCGCuUCAUGUa---GCACGCC----ACGUG- -5'
25720 5' -54.1 NC_005337.1 + 25133 0.66 0.925186
Target:  5'- aGCGCGAuGUugGgguuguccggCGacuugaaguucuUGUGGUGCACg -3'
miRNA:   3'- aCGCGCUuCAugUa---------GC------------ACGCCACGUG- -5'
25720 5' -54.1 NC_005337.1 + 29714 0.67 0.887396
Target:  5'- cGCGCGAGGcGCGcacgcgCGcGCGGUGUugcgGCg -3'
miRNA:   3'- aCGCGCUUCaUGUa-----GCaCGCCACG----UG- -5'
25720 5' -54.1 NC_005337.1 + 30747 0.68 0.872858
Target:  5'- cGCGCGcuccucGGgcgGCAgCGUGCGGaagcgcUGCACg -3'
miRNA:   3'- aCGCGCu-----UCa--UGUaGCACGCC------ACGUG- -5'
25720 5' -54.1 NC_005337.1 + 32518 0.66 0.940214
Target:  5'- gGUGCcguucuuGAAGgugaGCAgCGUGCGGcGCACg -3'
miRNA:   3'- aCGCG-------CUUCa---UGUaGCACGCCaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.