miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25721 3' -61.1 NC_005337.1 + 9641 0.66 0.667498
Target:  5'- cGCAGAGcGCGAuGCUgaGcaGCCCGCg -3'
miRNA:   3'- aCGUCUCcUGCUuCGGgaC--CGGGCGg -5'
25721 3' -61.1 NC_005337.1 + 65416 0.66 0.667498
Target:  5'- aGUGGAGGAgaCGGAGCugcacCCUGgguGCCUGCUc -3'
miRNA:   3'- aCGUCUCCU--GCUUCG-----GGAC---CGGGCGG- -5'
25721 3' -61.1 NC_005337.1 + 46323 0.66 0.667498
Target:  5'- gUGCAGGcGcAgGAGGUCCgGGCugCCGCCg -3'
miRNA:   3'- -ACGUCUcC-UgCUUCGGGaCCG--GGCGG- -5'
25721 3' -61.1 NC_005337.1 + 76855 0.66 0.667498
Target:  5'- gGUAGAuGGACGGGcGUCCggacGGCUCGgCg -3'
miRNA:   3'- aCGUCU-CCUGCUU-CGGGa---CCGGGCgG- -5'
25721 3' -61.1 NC_005337.1 + 34962 0.66 0.667498
Target:  5'- aGCAGucGACGAcccGGCgCUGcggaacGCCgCGCCg -3'
miRNA:   3'- aCGUCucCUGCU---UCGgGAC------CGG-GCGG- -5'
25721 3' -61.1 NC_005337.1 + 74386 0.66 0.665505
Target:  5'- cUGCGcGAGacguacaucucCGggGCUCUGGCcaCCGCCa -3'
miRNA:   3'- -ACGU-CUCcu---------GCuuCGGGACCG--GGCGG- -5'
25721 3' -61.1 NC_005337.1 + 35576 0.66 0.665505
Target:  5'- aGCGGAugccuagcgaggcGGAuccccgcCGGAGCaCCgUGGCuCCGCCc -3'
miRNA:   3'- aCGUCU-------------CCU-------GCUUCG-GG-ACCG-GGCGG- -5'
25721 3' -61.1 NC_005337.1 + 7211 0.66 0.664508
Target:  5'- cGUAGAaGACGAAcccGCCUUcggugcgcaccuccGcGCCCGCCg -3'
miRNA:   3'- aCGUCUcCUGCUU---CGGGA--------------C-CGGGCGG- -5'
25721 3' -61.1 NC_005337.1 + 99506 0.66 0.664508
Target:  5'- cGCGGAcugccuggugcucuGcGACGAcgcGGCCCgGuGCgCCGCCg -3'
miRNA:   3'- aCGUCU--------------C-CUGCU---UCGGGaC-CG-GGCGG- -5'
25721 3' -61.1 NC_005337.1 + 39159 0.66 0.664508
Target:  5'- cGCuGGAGGACGAccgcgAGCgCCUcgaGGaguuccucgacgauCCCGCCu -3'
miRNA:   3'- aCG-UCUCCUGCU-----UCG-GGA---CC--------------GGGCGG- -5'
25721 3' -61.1 NC_005337.1 + 6796 0.66 0.657525
Target:  5'- cGCGGuGGuguACgGAGGCCCcGGCCCcgaGCa -3'
miRNA:   3'- aCGUCuCC---UG-CUUCGGGaCCGGG---CGg -5'
25721 3' -61.1 NC_005337.1 + 100080 0.66 0.657525
Target:  5'- aUGCAGAaaaaGAAGUCCgcGGCgCGCCg -3'
miRNA:   3'- -ACGUCUccugCUUCGGGa-CCGgGCGG- -5'
25721 3' -61.1 NC_005337.1 + 91299 0.66 0.657525
Target:  5'- gGUAGAagauGGACGccGCCa-GGCUgGCCa -3'
miRNA:   3'- aCGUCU----CCUGCuuCGGgaCCGGgCGG- -5'
25721 3' -61.1 NC_005337.1 + 133468 0.66 0.657525
Target:  5'- cGCGGAcGGcuccGCGGAGC--UGGUCUGCCu -3'
miRNA:   3'- aCGUCU-CC----UGCUUCGggACCGGGCGG- -5'
25721 3' -61.1 NC_005337.1 + 133468 0.66 0.657525
Target:  5'- cGCGGAcGGcuccGCGGAGC--UGGUCUGCCu -3'
miRNA:   3'- aCGUCU-CC----UGCUUCGggACCGGGCGG- -5'
25721 3' -61.1 NC_005337.1 + 81832 0.66 0.657525
Target:  5'- gGaCAGGGGuCGuaGAGCCagGGCCCGgCg -3'
miRNA:   3'- aC-GUCUCCuGC--UUCGGgaCCGGGCgG- -5'
25721 3' -61.1 NC_005337.1 + 105196 0.66 0.657525
Target:  5'- cGCGGGGucCGcGGCCUggGGgCCGCUg -3'
miRNA:   3'- aCGUCUCcuGCuUCGGGa-CCgGGCGG- -5'
25721 3' -61.1 NC_005337.1 + 37418 0.66 0.657525
Target:  5'- cGCGGAGucGCGGAGCCgggGGaaCGCCa -3'
miRNA:   3'- aCGUCUCc-UGCUUCGGga-CCggGCGG- -5'
25721 3' -61.1 NC_005337.1 + 19254 0.66 0.657525
Target:  5'- gGCAGAGGAU---GCUCUuGUCCGCg -3'
miRNA:   3'- aCGUCUCCUGcuuCGGGAcCGGGCGg -5'
25721 3' -61.1 NC_005337.1 + 13824 0.66 0.656526
Target:  5'- cGCAGAucaggaccaugugGGGCGcgcAGUCCgccGCCUGCCg -3'
miRNA:   3'- aCGUCU-------------CCUGCu--UCGGGac-CGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.