miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25721 5' -57.9 NC_005337.1 + 100902 0.66 0.820462
Target:  5'- gCGGCGcuccgacgacUACAUGUGCACCa--CCGUGc -3'
miRNA:   3'- aGCCGC----------AUGUGCGCGUGGagaGGCAU- -5'
25721 5' -57.9 NC_005337.1 + 68965 0.66 0.819606
Target:  5'- gCGGCaUGCGCGCGCgcagcuuGCC-CUCCu-- -3'
miRNA:   3'- aGCCGcAUGUGCGCG-------UGGaGAGGcau -5'
25721 5' -57.9 NC_005337.1 + 11861 0.66 0.811831
Target:  5'- aUCGGCGcggacagGCGcCGCGCGCCg--CCGc- -3'
miRNA:   3'- -AGCCGCa------UGU-GCGCGUGGagaGGCau -5'
25721 5' -57.9 NC_005337.1 + 32010 0.66 0.811831
Target:  5'- gUUGGCGUACAUGgccacggugaCGCACCcggCCGUc -3'
miRNA:   3'- -AGCCGCAUGUGC----------GCGUGGagaGGCAu -5'
25721 5' -57.9 NC_005337.1 + 6231 0.66 0.811831
Target:  5'- -gGGCGUuggGCACGUGCacgGCCUUggCCGa- -3'
miRNA:   3'- agCCGCA---UGUGCGCG---UGGAGa-GGCau -5'
25721 5' -57.9 NC_005337.1 + 24535 0.66 0.811831
Target:  5'- gCGGaCGUGC-UGCGCACCg--CCGa- -3'
miRNA:   3'- aGCC-GCAUGuGCGCGUGGagaGGCau -5'
25721 5' -57.9 NC_005337.1 + 42919 0.66 0.811831
Target:  5'- cCGGCGUGCugcucCGCGCGCUcagggacauguUCUaCCGc- -3'
miRNA:   3'- aGCCGCAUGu----GCGCGUGG-----------AGA-GGCau -5'
25721 5' -57.9 NC_005337.1 + 4098 0.66 0.811831
Target:  5'- cUCcGCGUGCuccGCGCGCACggcCUCCGa- -3'
miRNA:   3'- -AGcCGCAUG---UGCGCGUGga-GAGGCau -5'
25721 5' -57.9 NC_005337.1 + 54100 0.66 0.811831
Target:  5'- aCGGCGUGUACGgGCGCUgCUaCGUGg -3'
miRNA:   3'- aGCCGCAUGUGCgCGUGGaGAgGCAU- -5'
25721 5' -57.9 NC_005337.1 + 99034 0.66 0.810959
Target:  5'- -aGGCGcuggacgccaggUACGCcgaccugaccuucGUGCGCUUCUCCGUGu -3'
miRNA:   3'- agCCGC------------AUGUG-------------CGCGUGGAGAGGCAU- -5'
25721 5' -57.9 NC_005337.1 + 98940 0.66 0.803038
Target:  5'- uUCGGCGccacGCACGCcuggguccgcgGCGCCgUCUUCGa- -3'
miRNA:   3'- -AGCCGCa---UGUGCG-----------CGUGG-AGAGGCau -5'
25721 5' -57.9 NC_005337.1 + 110056 0.66 0.803038
Target:  5'- aCGGcCGgggGCagcuccaccucgACGCGCGCCUCgCCGg- -3'
miRNA:   3'- aGCC-GCa--UG------------UGCGCGUGGAGaGGCau -5'
25721 5' -57.9 NC_005337.1 + 34859 0.66 0.803038
Target:  5'- gCGGCG-GCGCGC-CAUC-CUCCGa- -3'
miRNA:   3'- aGCCGCaUGUGCGcGUGGaGAGGCau -5'
25721 5' -57.9 NC_005337.1 + 2894 0.66 0.797688
Target:  5'- aCGGCcccgcggucgaagacGUAcCGCGCGCGCUUCU-CGUGc -3'
miRNA:   3'- aGCCG---------------CAU-GUGCGCGUGGAGAgGCAU- -5'
25721 5' -57.9 NC_005337.1 + 66012 0.66 0.794092
Target:  5'- -gGGCGaGCGCGUGUGggccaugcacguCCUCUUCGUGg -3'
miRNA:   3'- agCCGCaUGUGCGCGU------------GGAGAGGCAU- -5'
25721 5' -57.9 NC_005337.1 + 1510 0.66 0.794092
Target:  5'- cUCGGCGcGCGCcaGCGCGuCCgccaCUUCGUGu -3'
miRNA:   3'- -AGCCGCaUGUG--CGCGU-GGa---GAGGCAU- -5'
25721 5' -57.9 NC_005337.1 + 127897 0.66 0.794092
Target:  5'- cCGGCGaGCGCGUGCggGCCgagCCGg- -3'
miRNA:   3'- aGCCGCaUGUGCGCG--UGGagaGGCau -5'
25721 5' -57.9 NC_005337.1 + 112352 0.66 0.794092
Target:  5'- cUCGGCGga-GCGCGCgGCCacCUCCa-- -3'
miRNA:   3'- -AGCCGCaugUGCGCG-UGGa-GAGGcau -5'
25721 5' -57.9 NC_005337.1 + 82560 0.66 0.785
Target:  5'- gUUGGUGUgcaGCACgGCGCGCUggaUCUCCa-- -3'
miRNA:   3'- -AGCCGCA---UGUG-CGCGUGG---AGAGGcau -5'
25721 5' -57.9 NC_005337.1 + 2089 0.66 0.785
Target:  5'- aCGGUGUcgGCGCGCGCCgcgagC-CCGg- -3'
miRNA:   3'- aGCCGCAugUGCGCGUGGa----GaGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.