miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25723 3' -56.6 NC_005337.1 + 10350 1.1 0.002017
Target:  5'- gUGGGGAACGUCGUCACGCCGUCAGACa -3'
miRNA:   3'- -ACCCCUUGCAGCAGUGCGGCAGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 59657 0.75 0.40458
Target:  5'- cGGGGAacaucACGUCGUCGCGgcuCCGggAGGCg -3'
miRNA:   3'- aCCCCU-----UGCAGCAGUGC---GGCagUCUG- -5'
25723 3' -56.6 NC_005337.1 + 107704 0.75 0.40458
Target:  5'- -cGGcGACGUCGUCACGCUGUCcuucggcaaGGACg -3'
miRNA:   3'- acCCcUUGCAGCAGUGCGGCAG---------UCUG- -5'
25723 3' -56.6 NC_005337.1 + 12632 0.73 0.505148
Target:  5'- cGGGGGucgccGCGUCGUCgAUGCCGUgGGu- -3'
miRNA:   3'- aCCCCU-----UGCAGCAG-UGCGGCAgUCug -5'
25723 3' -56.6 NC_005337.1 + 10612 0.71 0.604816
Target:  5'- gGGGGAGCGgcggCGccaggacgaccgUCGCGCCGcugCAGAg -3'
miRNA:   3'- aCCCCUUGCa---GC------------AGUGCGGCa--GUCUg -5'
25723 3' -56.6 NC_005337.1 + 75121 0.71 0.635407
Target:  5'- gGGaGGAACGUCGUgGgGCUGUaccgcaCGGGCa -3'
miRNA:   3'- aCC-CCUUGCAGCAgUgCGGCA------GUCUG- -5'
25723 3' -56.6 NC_005337.1 + 38437 0.7 0.665974
Target:  5'- aGGGGcGCGUCaUCACGCCcg-AGGCg -3'
miRNA:   3'- aCCCCuUGCAGcAGUGCGGcagUCUG- -5'
25723 3' -56.6 NC_005337.1 + 34170 0.7 0.676119
Target:  5'- cGGGGAugcgcagcuccACG-CGgCGCGCCG-CGGACu -3'
miRNA:   3'- aCCCCU-----------UGCaGCaGUGCGGCaGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 75614 0.7 0.686229
Target:  5'- cUGGGGAGCGcCGaggacgcgCGgGCCGUCGuGAUg -3'
miRNA:   3'- -ACCCCUUGCaGCa-------GUgCGGCAGU-CUG- -5'
25723 3' -56.6 NC_005337.1 + 110340 0.69 0.706306
Target:  5'- cGGGcGGCGUCGcgCGCGCCugccgCGGGCg -3'
miRNA:   3'- aCCCcUUGCAGCa-GUGCGGca---GUCUG- -5'
25723 3' -56.6 NC_005337.1 + 30878 0.69 0.716255
Target:  5'- cGGGGA----UGUCGCGCUG-CAGGCg -3'
miRNA:   3'- aCCCCUugcaGCAGUGCGGCaGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 13903 0.69 0.735931
Target:  5'- cGGGGAccaGCGucaUCGUCGgGUCGUgggCGGGCg -3'
miRNA:   3'- aCCCCU---UGC---AGCAGUgCGGCA---GUCUG- -5'
25723 3' -56.6 NC_005337.1 + 77790 0.68 0.755247
Target:  5'- uUGGGGAGCG-CGUacggcagcaCGCGCCcgUAGACc -3'
miRNA:   3'- -ACCCCUUGCaGCA---------GUGCGGcaGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 85392 0.68 0.755247
Target:  5'- --aGGuGCGUgGUCugGCCGcCGGGCg -3'
miRNA:   3'- accCCuUGCAgCAGugCGGCaGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 31424 0.68 0.764748
Target:  5'- gUGcGGGuGCGUgCGgaaGCuGCCGUCGGACu -3'
miRNA:   3'- -AC-CCCuUGCA-GCag-UG-CGGCAGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 50984 0.68 0.766634
Target:  5'- cGGGGcgccgcgcguuCGUCGUCGgcccggcccucgagcCGCCaGUCAGGCu -3'
miRNA:   3'- aCCCCuu---------GCAGCAGU---------------GCGG-CAGUCUG- -5'
25723 3' -56.6 NC_005337.1 + 35165 0.68 0.773199
Target:  5'- cUGGcGGAguggucggcgacgGCGUCGUC-CGCCGUCc-ACa -3'
miRNA:   3'- -ACC-CCU-------------UGCAGCAGuGCGGCAGucUG- -5'
25723 3' -56.6 NC_005337.1 + 131554 0.68 0.774132
Target:  5'- cGGcGGACGUCGUCGCGCuCGUg---- -3'
miRNA:   3'- aCCcCUUGCAGCAGUGCG-GCAgucug -5'
25723 3' -56.6 NC_005337.1 + 91810 0.67 0.810317
Target:  5'- cGGGGGGCGUCGUUgaACGCgaGggugCAcacGACg -3'
miRNA:   3'- aCCCCUUGCAGCAG--UGCGg-Ca---GU---CUG- -5'
25723 3' -56.6 NC_005337.1 + 120459 0.67 0.810317
Target:  5'- cGGGGcGCGcUCGagcgCGCGCUGgaucgcgCGGACa -3'
miRNA:   3'- aCCCCuUGC-AGCa---GUGCGGCa------GUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.