miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25729 3' -55.9 NC_005337.1 + 25675 0.66 0.917714
Target:  5'- gCCGCggccCUCgaagGCG-GCGUcGCGCAGgaGCGg -3'
miRNA:   3'- -GGCG----GAGa---UGCuCGCA-CGCGUCa-UGC- -5'
25729 3' -55.9 NC_005337.1 + 125136 0.66 0.917714
Target:  5'- aCCGCCaagCgGCGAGC--GCGCuGUACc -3'
miRNA:   3'- -GGCGGa--GaUGCUCGcaCGCGuCAUGc -5'
25729 3' -55.9 NC_005337.1 + 5582 0.66 0.911887
Target:  5'- gCCGCgUCgccaGCGcGCGUGCccgGCGGgggACGa -3'
miRNA:   3'- -GGCGgAGa---UGCuCGCACG---CGUCa--UGC- -5'
25729 3' -55.9 NC_005337.1 + 103521 0.66 0.911887
Target:  5'- cUCGCCaagcUCUGCGAGgacGCGCAaaGUGCGc -3'
miRNA:   3'- -GGCGG----AGAUGCUCgcaCGCGU--CAUGC- -5'
25729 3' -55.9 NC_005337.1 + 9952 0.66 0.911887
Target:  5'- gCCGCgUCcAUGAGCGccUGCGCcGcgACGa -3'
miRNA:   3'- -GGCGgAGaUGCUCGC--ACGCGuCa-UGC- -5'
25729 3' -55.9 NC_005337.1 + 122903 0.66 0.911887
Target:  5'- cCCGCCgaugGCGAGCGcgcucgaggGCGCGaUGCu -3'
miRNA:   3'- -GGCGGaga-UGCUCGCa--------CGCGUcAUGc -5'
25729 3' -55.9 NC_005337.1 + 3100 0.66 0.908277
Target:  5'- cCCuCCUCcGCGcgcaucagcagcagcAGCGUGUGCAGcACGc -3'
miRNA:   3'- -GGcGGAGaUGC---------------UCGCACGCGUCaUGC- -5'
25729 3' -55.9 NC_005337.1 + 108643 0.66 0.905823
Target:  5'- gCgGCCgugGCGGGCGaccGCGCGG-ACGa -3'
miRNA:   3'- -GgCGGagaUGCUCGCa--CGCGUCaUGC- -5'
25729 3' -55.9 NC_005337.1 + 66082 0.66 0.905823
Target:  5'- gCgGCCgcgGCG-GCGgagGCGCuGUGCGg -3'
miRNA:   3'- -GgCGGagaUGCuCGCa--CGCGuCAUGC- -5'
25729 3' -55.9 NC_005337.1 + 81464 0.66 0.905823
Target:  5'- aUCGCCgggGCGggucuAGCGUGaCGgAGUACGc -3'
miRNA:   3'- -GGCGGagaUGC-----UCGCAC-GCgUCAUGC- -5'
25729 3' -55.9 NC_005337.1 + 40019 0.66 0.905823
Target:  5'- uCCGCgCgguggagaugCUaGCGGGCGUcGuCGCGGUGCGc -3'
miRNA:   3'- -GGCG-Ga---------GA-UGCUCGCA-C-GCGUCAUGC- -5'
25729 3' -55.9 NC_005337.1 + 127772 0.66 0.905823
Target:  5'- cCCGUCUUgACgGAGC--GCGUGGUGCGg -3'
miRNA:   3'- -GGCGGAGaUG-CUCGcaCGCGUCAUGC- -5'
25729 3' -55.9 NC_005337.1 + 10604 0.66 0.905823
Target:  5'- cCCGCCgcggGgGAGCGgcgGCGcCAGgACGa -3'
miRNA:   3'- -GGCGGaga-UgCUCGCa--CGC-GUCaUGC- -5'
25729 3' -55.9 NC_005337.1 + 90948 0.66 0.905823
Target:  5'- gCGCgUCgGCGAGCcccgaGCAGUACGu -3'
miRNA:   3'- gGCGgAGaUGCUCGcacg-CGUCAUGC- -5'
25729 3' -55.9 NC_005337.1 + 56399 0.66 0.905204
Target:  5'- -aGCCUCUuCGGcacCGUGCGCcucuucaAGUGCGu -3'
miRNA:   3'- ggCGGAGAuGCUc--GCACGCG-------UCAUGC- -5'
25729 3' -55.9 NC_005337.1 + 4012 0.66 0.899526
Target:  5'- aCGUC-CUugGGGCcaccgGUGUGCAGgUACGc -3'
miRNA:   3'- gGCGGaGAugCUCG-----CACGCGUC-AUGC- -5'
25729 3' -55.9 NC_005337.1 + 40538 0.66 0.899526
Target:  5'- gCCGCCgcgGCGcGCGgugGUGCGGUucuCGa -3'
miRNA:   3'- -GGCGGagaUGCuCGCa--CGCGUCAu--GC- -5'
25729 3' -55.9 NC_005337.1 + 10435 0.66 0.899526
Target:  5'- aCGCCUgcGCG-GCgGUGCGCGcgucGUGCGc -3'
miRNA:   3'- gGCGGAgaUGCuCG-CACGCGU----CAUGC- -5'
25729 3' -55.9 NC_005337.1 + 74525 0.66 0.895636
Target:  5'- aCGCCUCccucaucgaggaggGCG-GCGUGCGUAGcaGCa -3'
miRNA:   3'- gGCGGAGa-------------UGCuCGCACGCGUCa-UGc -5'
25729 3' -55.9 NC_005337.1 + 123586 0.66 0.892997
Target:  5'- gCCGCUgCUGCGAGCugcgGCcGCAcGUGCc -3'
miRNA:   3'- -GGCGGaGAUGCUCGca--CG-CGU-CAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.